Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2488 ATGAGTGACTCTTCGGTGAAGAATTTGGCTATCACGGAGAAGAAGGTGCAAAAGCCTGGTGGCTGTGTTGGGATTTTCCTTCAGCTCATTGATTGGAAGAGGAGACTCGCCAAGAAAAAGCTCTTCTCTCAGAAACTTCTCACTCCTGCTCGTGCAAAGAAGTTCAGGGGAGATGAGAAAATGCCAAATTCCAAGCTACATTTGATTGCTAATGAGAATAGTGAAGGTTTCCCAAGTGCCAAAAAAGGTGGGAGTCATGGTGTAGATGTAGAGCAAAAGACTGATATGCGAGCTCCTAGTTTGGTAGCTAGGCTGATGGGCCTAGAATACATTCCAGCTGCTCAGCGCAATAATTCAAAAGAAGTTCTGAATTCTGGTAGTTGTGGTGATGGGAAGGAGTCTTTGGCTAACAATTGTGAGTTGCATAATAGGAAAGGTGTAGATTTAGATATGGGAGTTGTAAAGCATGATTCAAGGCCTCAGAAGCTTCAGAAAACCGGGGCAGCGTGTGAGAGAAGGGCAGTGACTAGGTTTGGAGCAGAGGCCTTGCATATTAGAAGTGTTTTGTCAAGAGCAAGAAAACATAACCACCACCATCATCATCACCCAAAGCTTGCTTCTCCTTTGAAGAGCCCAAGAATTTCTTCTGGAAAAAGTGCTTCTCGAAGCTCAAGGTTAATAGGAGCTGCTACCAGGATTTTGGAACCTGGACTGCAGGCTAGGAAAGGTTCTCTTACATATCCTGCTTGCACGTATCCTCATGAGACGAACACTGTGACAAAAGATGCGCAAGATTGGTCAACAGTTATGCAAAATCAATCTTGTTATGATGCTGGCAGATCCAAAAATTTGATGGGGCAGACATCTTGCAAAAATTGCGGTAATCTGCTTGATGTTATTGAATGCAAGCAGGAAGTTCCTGTTCCTATATCCGTTGTTTCAGATGTTGCCACTGCTAACTCTATGGTATCATCGTCACAGAAGGAAAAGTCGTTCACTCCCTCTCATGGACAAAAAAGAGATATTGTTCTTCTGAGAAGTAAGGAAAAGCTCATATCTCTTGCTACTGAAGAGGAGGGAAAAAATAATGCACAACAGTCATGGAATGAACCCGCTACGAGAAGAATGGCAATGTCCTGTGAAGATAATGCATCGTCTTTTCCTTCAAAACATAAAATTCAAACACAAAAGCAGATGTTAAGCACTGAAAAATATTCACCGGGGTCTACAATGAGTAGTAATATGCAAGTAAAAAGGGGATCATCGTCGGCAAGTGGGACTAAAGACTTTGTTGCTCTGAATAGAAGCCTTAGTGGTAGAACAAGGATGAGGTCACCTACCAAACTGGATAGTTCCAAATTTGACATAGAGAAAAAACCTTGTAATAGACAGCTTAGTCCCTTGTCTCATGAGAGGACATTAGAGAAGAAAAGAAGGATCCTGAATGTCTCACAACTTGAAGGCACGGCTTCTGTTGGTTTGAAACAGAAAGATCTTTGTTCTGATGCATTAGGTGGAAAAAGGAGGGACTTCCCTCCTTCCTCCTTGAACAGTTTTAAGGTCAAGAATAAAAGAGATGGTCAGGGAGAAGAAATAAACAAGGTTATTGACAATAAGATCGATGATGTTGTTTCATTTACATTTAATTCCCCCTTGAAGCAAAAGACAGGAATACCTCTCGAGAAGGAAGAGACAAGCTGCAATAATGAGAGAAATGCATATTGCAATAGACTTTCTTCACCCTTGAAAGCTGATGCTTTAGGTGCCTTTCTAGAACAAAAATTGAAGGAATTGACCTCTCAAGAAGATGATGAGTTGGCTTCCAGTGCTCTACCTAAAAAACCAAGTTCCGTGATTCTTCAAGAGCTGCTATCTGCTCTTAATTCAGAGCATTTGGTCTGTCATGATGGCCATGTGTTTAATGACAATTGTGTAGCAAAACAAGAAAGGTTAATAGGAAACACTTTCAATGGTAATCAACTCAGTCCTGGATCTGTTTTGGAAGCTTCCTTTTCTTCCAGTAGCCTGGATGAAAGCTCAGGGCATGGTTTTCACCCTTACTCCATGAATTACTCATATGGTCAACCAGAACAATGGGATCATGATATTGAACTTTCAGATTCTGCAACATCATTTAACAATGGAATGATAGGTGAGATCCTCAGCCAAATTCCTAGTGCATTACAATGTCTACATTCATTTGGGAGACAATTCCCCAGAAGCAAGGTCAACAATGTAAAGGATGTTCTCTTGAATGCGGAATTAGTGCTTCGAATTGCAACTGACCACAATGAGGGTGAAGTGTCTCAATTTCTAATTTTTCAGTTTCTCCTCGAGGAATTGGACACCATGGCAAGTGATGCTATGTGGACTGAATTTGAGGGCTTTATGGCTTATAAGGGTGATTCTAAACAAAGAAATAAACTCAAGGGATTTCTCTTTGACTGTGTTGTGGAATATCTTGAATCAAATTGCTGCAAATATTTTCACTCTGGATTCAGGGCATGGACAAAGCTACCATTATGCGTGAAAGGTAATGTGTTGGCTCAAGAAGTTAAGAGGGAGATGAAGAAGTGGGAATGCAAGGCTGGGATGATGCCTGATGAAATAATAGAATGGGAGATGAGCCACTCCTTGGGGAAATGGACTGACTTTGATATTGAAGCATTTGAGGCTGGTGTTGGTATAGATGGGGATATACTTCAAATTTTGGTTGGTGAAATTGTTGAAGACCTTGTTGGTTCCAATCATAGCTTTATGTCCTTATAA 2769 0.4106 MSDSSVKNLAITEKKVQKPGGCVGIFLQLIDWKRRLAKKKLFSQKLLTPARAKKFRGDEKMPNSKLHLIANENSEGFPSAKKGGSHGVDVEQKTDMRAPSLVARLMGLEYIPAAQRNNSKEVLNSGSCGDGKESLANNCELHNRKGVDLDMGVVKHDSRPQKLQKTGAACERRAVTRFGAEALHIRSVLSRARKHNHHHHHHPKLASPLKSPRISSGKSASRSSRLIGAATRILEPGLQARKGSLTYPACTYPHETNTVTKDAQDWSTVMQNQSCYDAGRSKNLMGQTSCKNCGNLLDVIECKQEVPVPISVVSDVATANSMVSSSQKEKSFTPSHGQKRDIVLLRSKEKLISLATEEEGKNNAQQSWNEPATRRMAMSCEDNASSFPSKHKIQTQKQMLSTEKYSPGSTMSSNMQVKRGSSSASGTKDFVALNRSLSGRTRMRSPTKLDSSKFDIEKKPCNRQLSPLSHERTLEKKRRILNVSQLEGTASVGLKQKDLCSDALGGKRRDFPPSSLNSFKVKNKRDGQGEEINKVIDNKIDDVVSFTFNSPLKQKTGIPLEKEETSCNNERNAYCNRLSSPLKADALGAFLEQKLKELTSQEDDELASSALPKKPSSVILQELLSALNSEHLVCHDGHVFNDNCVAKQERLIGNTFNGNQLSPGSVLEASFSSSSLDESSGHGFHPYSMNYSYGQPEQWDHDIELSDSATSFNNGMIGEILSQIPSALQCLHSFGRQFPRSKVNNVKDVLLNAELVLRIATDHNEGEVSQFLIFQFLLEELDTMASDAMWTEFEGFMAYKGDSKQRNKLKGFLFDCVVEYLESNCCKYFHSGFRAWTKLPLCVKGNVLAQEVKREMKKWECKAGMMPDEIIEWEMSHSLGKWTDFDIEAFEAGVGIDGDILQILVGEIVEDLVGSNHSFMSL* 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2488 922 MobiDBLite consensus disorder prediction 192 226 - -
Lja1g2488 922 MobiDBLite consensus disorder prediction 212 226 - -
Lja1g2488 922 PANTHER DNAA INITIATOR-ASSOCIATING PROTEIN 9 914 - -
Lja1g2488 922 MobiDBLite consensus disorder prediction 192 207 - -
Lja1g2488 922 Pfam Domain of unknown function (DUF4378) 746 907 IPR025486 -
Lja1g2488 922 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED 9 914 - -
Lja1g2488 922 MobiDBLite consensus disorder prediction 440 460 - -
Lja1g2488 922 Pfam DUF761-associated sequence motif 91 116 IPR032795 -
Lja1g2488 922 MobiDBLite consensus disorder prediction 446 460 - -
Lja1g2488 922 MobiDBLite consensus disorder prediction 402 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2488 Lja-Chr1 28820216 28824895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2488 1 912 TRM (TON1 Recruiting Motif) Superfamily AT1G67040 31.983 1.01e-95 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2488 - - gmx:100813026 1170.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2488 1 28820216 28824895 Lja1g2488 1 28820216 28824895 ECH