Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2482 ATGTATGCTGAGAAAACCTCACACCCAAAAATTTCGCAGCAACTCTTCTTTCTTCTTCGTAGATCTCTCTATCGAATTCGCAACAATTCCGAACCCATGGCGTCGACGGAAGAGCCCATCGCTTCGATCATCATGGAGGAGCCTGTCCCGAAGGAGCCGGCAACCGCTGACCTTCCACCGGTGGCTGAGGATGAGCTTGCTCAGCCCGATCCCAACCCTACCAAGGAAGCCAAACCTAGGAAATGTGATATGGTGAAGGATGCGATTGTGACGCTAAAGGAGAAGAGCGGTTCCAGCCAGTACGCAATTGCGAAGTTTCTAGAGAAGAAGCACAAGCAGCTTCCATCGAACTTCAAGAAGCTTTTGTTGTTCCATTTGAAGAAGCTTGTTGCTGCTGGGAAACTTGTTAGGGTGAAAAACTCCTTCAAGCTTCCGTCGGTGAAGTCCTCCGTCGCTGCTTCCAGGCCGGCGGCGGCAAAGAAGAAGCTTGCAGTTGCCGAACCCAAGCCCAAGGCTAGGGCCAAGCCGGCGGCATCTAAGGCGAAACCTGCTCCCAAGCCGAAGGCAGCGACTAAGACCACTGCCGCAACATCCAAGGCAAAGCCTGTCACGGCGGCCAAGTCTAAGGCGAAGCCAGCTGCTAAGGCGAAGCCGATGGCTAAGACCAAGGCGGTTGCTCCTGCTAAGGCGAAAGCTTCTCCGACTAAGACTAAGGCTGAGGCGAAGTATAAGTCGGCGCCTCGTATGAATGAGAAGCCTCCTGTTCCGAAGGTGAAGCCTGCCGCTAAGGCGAAGCCCGCGGCGAGACCTGCAAAGGCGGCGAGGACCTCGACAAGAACAACCACCGAGAAGAAAGCGCCTCCTCCTCCAAAACCTGCACCGAAGAAGGCTGCTACGCCTGTGAAGAAGGCTCCGACGAAGAGTGCGAAGGCTAACACTGTGAAGTTGTCGGCGTAG 957 0.5486 MYAEKTSHPKISQQLFFLLRRSLYRIRNNSEPMASTEEPIASIIMEEPVPKEPATADLPPVAEDELAQPDPNPTKEAKPRKCDMVKDAIVTLKEKSGSSQYAIAKFLEKKHKQLPSNFKKLLLFHLKKLVAAGKLVRVKNSFKLPSVKSSVAASRPAAAKKKLAVAEPKPKARAKPAASKAKPAPKPKAATKTTAATSKAKPVTAAKSKAKPAAKAKPMAKTKAVAPAKAKASPTKTKAEAKYKSAPRMNEKPPVPKVKPAAKAKPAARPAKAARTSTRTTTEKKAPPPPKPAPKKAATPVKKAPTKSAKANTVKLSA* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2482 318 MobiDBLite consensus disorder prediction 146 318 - -
Lja1g2482 318 Pfam linker histone H1 and H5 family 82 144 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lja1g2482 318 CDD H15 83 156 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lja1g2482 318 Gene3D - 74 153 IPR036388 -
Lja1g2482 318 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 77 146 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lja1g2482 318 SMART h15plus2 55 141 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lja1g2482 318 PANTHER HISTONE H1.1 207 316 - -
Lja1g2482 318 PANTHER HISTONE H1.1 46 241 - -
Lja1g2482 318 PANTHER HISTONE H1 207 316 - -
Lja1g2482 318 SUPERFAMILY "Winged helix" DNA-binding domain 77 147 IPR036390 -
Lja1g2482 318 PRINTS Histone H5 signature 214 233 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lja1g2482 318 PRINTS Histone H5 signature 91 108 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lja1g2482 318 PRINTS Histone H5 signature 192 209 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lja1g2482 318 MobiDBLite consensus disorder prediction 49 80 - -
Lja1g2482 318 PANTHER HISTONE H1 46 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2482 Lja-Chr1 28743213 28744205 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2482 69 146 Single Myb Histone (SMH) Gene Family AT1G72740 35.897 1.36e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2482 K11275 - gmx:100795994 132.494