Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2481 ATGGCGTCGACGGAAGAGCCCATCGCTTCGATCATCATGGAGGAGCCTGTCCCGAAGGAGCCGGCAACCGCTGACCTTCCACCGGTGGCTGAGGATGAGCTTGCTCAGCCCGATCCCAACCCTACCAAGGAAGCCAAACCTAGGAAATGCGATGTTGCCAAGAAGGCCACACATCTTTCCTACGAAGAGATGGTGAAGGATGCGATTGTGACGCTAAAGGAGAAGAGCGGTTCCAGCCAGTACGCAATTGCGAAGTTTCTAGAGAAGAAGCACAAGCAGCTTCCATCGAACTTCAAGAAGCTTTTGTTGTTCCATTTGAAGAAGCTTGTTGCTGCTGGGAAGCTTGTTAGGGTGAAAAACTCCTTCAAGCTTCCGTCGGTGAAGTCCTCCGTCGCTGCTTCCAGGCCGCCGGCGGCGAAGAAGAAGCTTGCAGTTGCCGAACCCAAGCCCAAGGCTAGGGCCAAGCCGGCGGCATCCAAGGCGAAACCTGCTCCCAAGCCGAAGGCAGCGACTAAGACCACTACCGCAACATCCAAGGCAAAGCCTGGCGGCCAAGTCTAA 561 0.5544 MASTEEPIASIIMEEPVPKEPATADLPPVAEDELAQPDPNPTKEAKPRKCDVAKKATHLSYEEMVKDAIVTLKEKSGSSQYAIAKFLEKKHKQLPSNFKKLLLFHLKKLVAAGKLVRVKNSFKLPSVKSSVAASRPPAAKKKLAVAEPKPKARAKPAASKAKPAPKPKAATKTTTATSKAKPGGQV* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2481 186 PANTHER HISTONE H1.1 3 181 - -
Lja1g2481 186 MobiDBLite consensus disorder prediction 1 51 - -
Lja1g2481 186 MobiDBLite consensus disorder prediction 126 186 - -
Lja1g2481 186 MobiDBLite consensus disorder prediction 37 51 - -
Lja1g2481 186 MobiDBLite consensus disorder prediction 170 186 - -
Lja1g2481 186 CDD H15 55 142 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lja1g2481 186 PANTHER HISTONE H1 3 181 - -
Lja1g2481 186 SUPERFAMILY "Winged helix" DNA-binding domain 54 127 IPR036390 -
Lja1g2481 186 Pfam linker histone H1 and H5 family 58 124 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lja1g2481 186 SMART h15plus2 55 121 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lja1g2481 186 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 57 126 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lja1g2481 186 Gene3D - 52 132 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2481 Lja-Chr1 28711106 28711666 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2481 58 126 Single Myb Histone (SMH) Gene Family AT1G49950 34.783 2.46e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2481 K11275 - gmx:100775944 149.058