Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2468 ATGCGGATGAGTTGCAACGGATGCAGGGTGCTCCGAAAAGGTTGCAGTGAGAATTGCAGCATCAGACCCTGTTTGCAGTGGATCAAGAGCCCTGAATCTCAAGCAAACGCCACCGTCTTCCTCGCCAAGTTCTATGGCCGTGCTGGCCTCATGAACCTCGTCAACTCCGGCCCCGAACATCTCCGACCAGCGATTTTTCGTTCGTTGTTGTACGAGGCTTGCGGTCGGATAGTGAACCCGATTTACGGTTCTGTGGGTTTGTTATGGTCGGGGAGCTGGCAGCTATGTCAAGCCGCCGTCGAAGCCGTTCTGAAAGGCGCCCCGATTACGCCGATCACTTCTGAAGCCGCCGCCAGCGGGCGCGGCCCACCCCTCAAGGCCTACGACATCCGCCACGTGTCTCGTGACGAGAATTCGGCGGCGTCCAACGAAACTCAGCAGCAGCGAGTCAAGACCCGGTCCCGGGTCAAGCGATCCGTCGCCAAGCTGAAGCCCGCCGGCGAGGAGAAGAACGGTGGCAAGCGAGCCGAATCCTGCTCGGCTGAGCCGGTTGAAGAAGCGCGTGGCGGCGCTGGCCGGGTTGGGTGGACCGGAGAGGTGCTGAACCGGTCCGGGAGCCATGACCATGAGTCCTCGCTGAGCCACCAGTCGGAGGCGGCGAATGCTGCCGCGGAGGGTGAGAGCAAAGAGAGCGAGAGCATAGTGTCTGTGGAGACGGCGGAGAATTCCGTCCTTTTCCGCAATGAACCGGAGTCGAACCGGAAGCGAGTGGATCGAACCGGAGAGAGCAGCGAGGATCATGTTGGTCTGGAGCTGACGCTTGGGTTTGAACCAGCGCGTGTGCATCACGTGGTTCCGGTTAAGAAGAGGAGGATTGAGCTGAAGGGTTTTGGTGGCTCGGCTGAGAATGGCTCTTGCAAGATGGAGCTGGGGCTTCAATTACCGGCTTGA 951 0.5983 MRMSCNGCRVLRKGCSENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLVNSGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPITSEAAASGRGPPLKAYDIRHVSRDENSAASNETQQQRVKTRSRVKRSVAKLKPAGEEKNGGKRAESCSAEPVEEARGGAGRVGWTGEVLNRSGSHDHESSLSHQSEAANAAAEGESKESESIVSVETAENSVLFRNEPESNRKRVDRTGESSEDHVGLELTLGFEPARVHHVVPVKKRRIELKGFGGSAENGSCKMELGLQLPA* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2468 316 PANTHER LOB DOMAIN-CONTAINING PROTEIN 40 1 313 - -
Lja1g2468 316 MobiDBLite consensus disorder prediction 248 266 - -
Lja1g2468 316 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
Lja1g2468 316 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Lja1g2468 316 MobiDBLite consensus disorder prediction 134 266 - -
Lja1g2468 316 PIRSF AS2 1 314 IPR017414 -
Lja1g2468 316 MobiDBLite consensus disorder prediction 161 182 - -
Lja1g2468 316 MobiDBLite consensus disorder prediction 233 247 - -
Lja1g2468 316 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2468 Lja-Chr1 28562823 28564584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2468 1 312 AS2 family AT3G02550 56.508 1.19e-107 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lja1g2468 LOB 1.7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2468 - - lja:Lj1g3v3317390.1 595.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2468 1 28562823 28564584 Lja1g2468 1 28562823 28564584 ECH
Lja1g2468 1 28562823 28564584 Lja2g3145 2 67091345 67093176 ECH