Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2456 ATGGAAGGAAACAAAGAGCAGATTGTGGATGTTGGATCGGTGGTTGAATCCGTTTCTGCTGAAGATGGTGACGCCCCTCTTTACCAACTCGAAAGCCTCTGCATGCGTTGTCATCAAAATGGGACTACAAGACTTCTATTGACTATAATTCCAAATTTCAGAAAGATTTTGTTGTCGGCTTTCGATTGTCCTCATTGTGGTGAAAGGAACAATGAAGTTCAGTTTGCTGGCGAAATTCAACCGCGTGGTTGTTGTTACTCTTTGGAGATCCCATCAGGCAAACAGAAGATGCTCAACCGGCAAGTGGTAAAATCAGAATCTGCGACCATTAAGATACCTGAATTGGAATTTGAGATACCACCAGAGGCTCAACGTGGTAGTCTGTCAACGGTGGAGGGGGTACTAACGCGAGCTGCTGATGGACTTCAGGCCCTTCAAGAAGAACGCAGAAAAGTGGCTCCAGAGACAGCTGAAGCACTCGATCAATTCTTGGCGAAATTGCGAGCTTGTGCAACAGGAGAATCATCCTTCACATTTATTGTTGATGATCCTGCGGGAAACAGCTTCATTGAAAACCCGTTTGCACCAGCATCTGATCCATCACTGACTACCAAGTTTTATGAGCGAACTCCTGAGCAACAAACATTGTTGGGATATCTTGTTGATTCTACACCGATTGAAGGAACTCGTGGCGAAGCACCAGAAGGAGTAGAAGCTGTGGCTGGTAATCAAATGATGAGAGAACCACATGGGTCAGTGGGGGCAGCAGCTGGTCATCGAGCCATTGCACAAAGTAATAGTGCAGATATAGCAGAAGCATTATTTCGCTATACTGCACCAGAAGAGGTGATGACTTTCCCATCTACCTGTGGTACCTGTGCCAGTAGTTGCGAGACTCGAATGTTCGTCACCAATATTCCATACTTCCAAGAAGTAATTGTAATGGCATCCACATGCGATGCTTGTGGTTACCGCAACTCTGAGTTGAAACCTGGTGGCCGAATTCCTGAAAAAGGAAAAAAGATTACTCTCTATGTGAAAAATGTTAATGACCTGAGCCGAGATGTAATAAAGTCTGATACAGCAAGTGTAAAAATTCCTGAACTTGAGTTGGAGCTGGCAAGTGGCACCCTGGGAGGACTTGTCACAACTGTTGAAGGTTTAATTTCAAAAATTAGTGAAAGCCTTGAGAGGGTCCATGGGTTTACTTTTGGAGATAGCCTTGATCAAGATAGAAAAAGCAAATGGATAGACTTCAAAGCAAGGCTAGACAAGCTTCTTAGCTTGGAAGAAGCATGGACTCTAGTTCTTGATGATGCATTAGCCAATTCTTTTATAGCACCTGCAACTGATGATCTAAAAGACGACAATCAATTAACATTTGAGGAATATGAGAGGTCGTGGGAGCAAAATGAAGAATTGGGTCTGAATGATATTGACACATCCAGTGCTGATGCTGCTTATGAATCAACAAATACTACTAAAAGTGAGTGA 1494 0.4351 MEGNKEQIVDVGSVVESVSAEDGDAPLYQLESLCMRCHQNGTTRLLLTIIPNFRKILLSAFDCPHCGERNNEVQFAGEIQPRGCCYSLEIPSGKQKMLNRQVVKSESATIKIPELEFEIPPEAQRGSLSTVEGVLTRAADGLQALQEERRKVAPETAEALDQFLAKLRACATGESSFTFIVDDPAGNSFIENPFAPASDPSLTTKFYERTPEQQTLLGYLVDSTPIEGTRGEAPEGVEAVAGNQMMREPHGSVGAAAGHRAIAQSNSADIAEALFRYTAPEEVMTFPSTCGTCASSCETRMFVTNIPYFQEVIVMASTCDACGYRNSELKPGGRIPEKGKKITLYVKNVNDLSRDVIKSDTASVKIPELELELASGTLGGLVTTVEGLISKISESLERVHGFTFGDSLDQDRKSKWIDFKARLDKLLSLEEAWTLVLDDALANSFIAPATDDLKDDNQLTFEEYERSWEQNEELGLNDIDTSSADAAYESTNTTKSE* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2456 497 Gene3D ZPR1, zinc finger domain 278 333 IPR042452 -
Lja1g2456 497 Gene3D ZPR1, zinc finger domain 24 77 IPR042452 -
Lja1g2456 497 TIGRFAM ZPR1_znf: ZPR1 zinc finger domain 289 480 IPR004457 GO:0008270
Lja1g2456 497 TIGRFAM ZPR1_znf: ZPR1 zinc finger domain 34 214 IPR004457 GO:0008270
Lja1g2456 497 Pfam ZPR1 zinc-finger domain 32 191 IPR004457 GO:0008270
Lja1g2456 497 Pfam ZPR1 zinc-finger domain 288 446 IPR004457 GO:0008270
Lja1g2456 497 PANTHER ZINC FINGER PROTEIN ZPR1-RELATED 6 490 - -
Lja1g2456 497 Gene3D ZPR1, A/B domain 78 219 IPR042451 -
Lja1g2456 497 Gene3D ZPR1, A/B domain 334 476 IPR042451 -
Lja1g2456 497 PANTHER ZINC FINGER PROTEIN ZPR1 6 490 IPR040141 -
Lja1g2456 497 SMART zpr1 32 192 IPR004457 GO:0008270
Lja1g2456 497 SMART zpr1 288 448 IPR004457 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2456 Lja-Chr1 28341408 28352554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2456 1 495 C2H2 Transcription Factor Family AT5G22480 73.387 0.0 764
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2456 K06874 - gmx:100798741 868.996