Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2454 ATGTTGAATCAGTGTACTTCGGCCGAAGATCGGGCTTTTGAGCGAGCCCTCGGAACCATGTCTGATGATGCGGATCTGGAAGACCAGTTGGAACGAATTGCCGATGCACTTGGTCGTCCGTTGAAGGAGATTAGGGAAAGGTATGAATTGCTCGCACTTGACATTAAAAATATTGAAGAAGGTCCTGCTCCAGATTTCATTGGCGATTGGGTTCCAGAGCCAATTGCTAAAGGCTCTACTAGTTCACAAAAAAACACAAAGAAGACCTCTCCTAATCAAAGTGAGAAAAAAGTACCATGGACTACAGAAGAACACCTGAAGCTTCTTGAGGGTATTAAGAAACGTGGCAAAGGACAATGGAAACAAATCTCAAGTGAATTTGTCAAAACAAAAACTCCAACTCAAATTGCTAGTCATGCTCAAAAGTTATATCTTCACCGGAATGGTACACCAAAAAGGAGAAAAAGAACAAGCATCTATGACCTAACCATTGATGATATTGACTTGGTTCCTCAACAAAACCAAGTTCCTCAATTGAATGCTCCATTGCAGCAAAATTGGGCACAATTGGATGCTCCAATGCAGCAATTATCCTCTCAGCAAAATCAAGTTGATGCATTGGACTTTCCACTGCAGCAAAATGGGGATCCTCCTTTGAATTTTCCACATCAAGTATACCCTCAGCATTATTGTACTACTCCTTGGAATGTGCAGCAACTATCCTATCAGCAAAATGGGCATCCTCCTATGAATTTTCCGATGCAACCATCACAAGAAATACAACAAAGTGATTTGGCCTCTCAACAATATTTGGTTCCTCCTTTGGATGCTCCAATGCAGCAATTGCAAGAAACGCAACACACCTTAGGGGATAGTGCCTTGGCCTCTGAGCAACATGTGGTTCCTACTTCAGAAGTAATGCCAATGCAGCAATTGCAAGAAAGGCCTCAAGAACATCAAGCTATCGATTCAAGACATTATGCTTGGAAACCCGTTGGCAACCATGGACGTTAG 1014 0.4241 MLNQCTSAEDRAFERALGTMSDDADLEDQLERIADALGRPLKEIRERYELLALDIKNIEEGPAPDFIGDWVPEPIAKGSTSSQKNTKKTSPNQSEKKVPWTTEEHLKLLEGIKKRGKGQWKQISSEFVKTKTPTQIASHAQKLYLHRNGTPKRRKRTSIYDLTIDDIDLVPQQNQVPQLNAPLQQNWAQLDAPMQQLSSQQNQVDALDFPLQQNGDPPLNFPHQVYPQHYCTTPWNVQQLSYQQNGHPPMNFPMQPSQEIQQSDLASQQYLVPPLDAPMQQLQETQHTLGDSALASEQHVVPTSEVMPMQQLQERPQEHQAIDSRHYAWKPVGNHGR* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2454 337 MobiDBLite consensus disorder prediction 76 97 - -
Lja1g2454 337 Coils Coil 41 61 - -
Lja1g2454 337 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 96 146 IPR006447 GO:0003677
Lja1g2454 337 Gene3D - 6 51 - -
Lja1g2454 337 Gene3D - 100 147 - -
Lja1g2454 337 ProSiteProfiles Myb-like domain profile. 92 144 IPR001005 -
Lja1g2454 337 ProSiteProfiles SANT domain profile. 95 148 IPR017884 -
Lja1g2454 337 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 4 203 IPR043363 -
Lja1g2454 337 SMART sant 96 146 IPR001005 -
Lja1g2454 337 SMART sant 1 54 IPR001005 -
Lja1g2454 337 PANTHER SYRINGOLIDE-INDUCED PROTEIN 1-3-1B 4 203 - -
Lja1g2454 337 MobiDBLite consensus disorder prediction 311 337 - -
Lja1g2454 337 Pfam Myb-like DNA-binding domain 97 143 IPR001005 -
Lja1g2454 337 MobiDBLite consensus disorder prediction 66 100 - -
Lja1g2454 337 SUPERFAMILY Homeodomain-like 94 147 IPR009057 -
Lja1g2454 337 CDD SANT 99 143 IPR001005 -
Lja1g2454 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 92 148 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2454 Lja-Chr1 28332709 28334496 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lja1g2454 Myb_DNA-binding 2.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2454 - - lja:Lj1g3v4024040.1 348.206