Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2435 ATGCCGGAGCTTCGTAGTGAACCGCAACGCCGTCGTGGTGCTCCGGTAGGCCGTAGAATCTCTGAAACACCGTCTCCGGCTGCCAAATACGTCAAAACTCGGGCTGCAGTCGCGGCGGCAAAGAAGCTCGAGCAGGAGAAGCCGGCGGTGATCGTGATATCGGAGGACCAAAGGAAGGAGAAGGAAGAAGAAGAAGTTGAAGCAGGCTTGATGGGTGGTGGTGATAGTGGCGGGTTGAGTGCTAACAAGGGCATCCCTCAAGAGGATGAAGGCAACACTACCCCTTTTCCTGAGAGGGTTCAAGTAGGAGGATCACCTGTGTACAAAGTGGAGAGGAAACTGGGTAAAGGTGGATTTGGACAGGTCTTTGTTGGCCGTCGAGTTACCGGTGGTACTGACCGTATTAATGGCCCCGGTGCCACTGAGGTGGCTCTGAAATTTGAACATAGGAACAGTAAAGGCTGTAACTATGGCCCTCCATATGAATGGCAAGTGTACAACACCCTTGGTGGCAGTCATGGGATACCTAAAGTACATTATAAAGGAAGACAAGGAGAATACTACGTAATGGTTATGGACATGCTTGGTCCAAGCTTATGGGATGTATGGAATAACTCAAACCAGGCGATGTCTGCGGAAATGGTTTCATGTATTGCCGTTGAATCATTGTCGATCCTGGAGAAGATGCACTCAAGAGGATATGTGCATGGAGATGTAAAACCAGAGAATTTTTTACTAGGACAGCCAAATACACCACAAGAGAAGAAATTGTTTCTTGTTGACCTGGGATTAGCAACAAAATGGAGAGACACCTCCAGTGGACAGCATGTTGAGTATGATCAACGCCCTGATATGTTCAGGGGGACTGTTCGATATGCCAGTGTTCATGCACACTTGGGAAGAACTGCTAGTCGAAGGGATGATCTTGAATCTCTTGCATATACACTCATTTTCCTACATAAAGGCCGGTTACCGTGGCAAGGTTATCAGGGTGATAACAAATCCTTCCTTGTTTGCAAAAAGAAGATGGGAACATCTCCTGAGATGTTATGCTGCTTCTGCCCTCCTCCCTTTAGACAGTTTCTTGAGTTTGTAGTGAACATGAAATTTGATGAAGAACCTAACTATTCCAAGCTAATAACTCTCTTTGATGGTATGCTTGGACCAAATCCTGCATTGCGGCCTATTAATACTGAAGGTGCTCAAAAGGTTGGGCAAAAAAGGGGTAGATTGAATACTGAGGAAGAGGATGATTCACAGCCCAAAAAGAAGGTTCGTTTGGGGGTTCCCGCTACCCAGTGGATTTCAGTTTACAATGCAAGACTGCCAATGAAGCAAAGGTATCATTACAACGTAGCGGATGCAAGATTAGCACAGCATGTGGAGAGGGGGATTGCAGATGGGCTTCTTATTAGTTGTGTGTCTTCTTGTACCAATCTCTGGGCACTTATTATGGATGCTGGAACTGGTTTTACATCTCAAGTTTACAAGTTGTCGCCTTTTTTCTTACACAAGGAATGGATCATGGAGCAGTGGGAAAAGAACTATTACATTACTTCTATAGCTGGGGCTAATAATGGGAGCTCTCTTGTCGTAATGTCAAAAGGCACACAATATACACAACAATCATACAAAGTAAGTGATTCCTTTCCCTTCAAATGGATCAACAAGAAGTGGAGAGAAGGCTTTCATGTGACTTCGATGGCCACTGCTGGAAGCCGCTGGGGCGTTGTTATGTCTCGAAATGCTGGATTTAGTGATCAGGTTGTCGAACTTGATTTTCTCTATCCTAGTGATGGAATCCACAGACGTTGGGATAATGGTTACAGGATTACTGCAACTGCTGCTACATGGGATCAATCTGCTCTTATATTAAGCATTCCGAGGCGCAGGCCTGGTGATGAAACCCAGGAAACTCTGCGTACATCTCAATTTCCAAGCACACATGTCAAGGAGAAATGGTCAAAAAACCTATATCTTGCTTGTCTGTGCTATGGGCGCACTGTATGCTGA 2013 0.456 MPELRSEPQRRRGAPVGRRISETPSPAAKYVKTRAAVAAAKKLEQEKPAVIVISEDQRKEKEEEEVEAGLMGGGDSGGLSANKGIPQEDEGNTTPFPERVQVGGSPVYKVERKLGKGGFGQVFVGRRVTGGTDRINGPGATEVALKFEHRNSKGCNYGPPYEWQVYNTLGGSHGIPKVHYKGRQGEYYVMVMDMLGPSLWDVWNNSNQAMSAEMVSCIAVESLSILEKMHSRGYVHGDVKPENFLLGQPNTPQEKKLFLVDLGLATKWRDTSSGQHVEYDQRPDMFRGTVRYASVHAHLGRTASRRDDLESLAYTLIFLHKGRLPWQGYQGDNKSFLVCKKKMGTSPEMLCCFCPPPFRQFLEFVVNMKFDEEPNYSKLITLFDGMLGPNPALRPINTEGAQKVGQKRGRLNTEEEDDSQPKKKVRLGVPATQWISVYNARLPMKQRYHYNVADARLAQHVERGIADGLLISCVSSCTNLWALIMDAGTGFTSQVYKLSPFFLHKEWIMEQWEKNYYITSIAGANNGSSLVVMSKGTQYTQQSYKVSDSFPFKWINKKWREGFHVTSMATAGSRWGVVMSRNAGFSDQVVELDFLYPSDGIHRRWDNGYRITATAATWDQSALILSIPRRRPGDETQETLRTSQFPSTHVKEKWSKNLYLACLCYGRTVC* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2435 670 MobiDBLite consensus disorder prediction 54 101 - -
Lja1g2435 670 Pfam Protein kinase domain 108 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2435 670 ProSitePatterns Protein kinases ATP-binding region signature. 114 146 IPR017441 GO:0005524
Lja1g2435 670 MobiDBLite consensus disorder prediction 394 423 - -
Lja1g2435 670 PANTHER CASEIN KINASE-RELATED 65 641 - -
Lja1g2435 670 MobiDBLite consensus disorder prediction 1 17 - -
Lja1g2435 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 234 246 IPR008271 GO:0004672|GO:0006468
Lja1g2435 670 MobiDBLite consensus disorder prediction 408 423 - -
Lja1g2435 670 SMART serkin_6 108 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2435 670 MobiDBLite consensus disorder prediction 1 30 - -
Lja1g2435 670 CDD STKc_CK1 108 383 - -
Lja1g2435 670 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 65 641 - -
Lja1g2435 670 Gene3D Transferase(Phosphotransferase) domain 1 88 429 - -
Lja1g2435 670 ProSiteProfiles Protein kinase domain profile. 108 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2435 670 SUPERFAMILY Protein kinase-like (PK-like) 108 391 IPR011009 -
Lja1g2435 670 MobiDBLite consensus disorder prediction 54 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2435 Lja-Chr1 28072791 28078723 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2435 107 269 EF-hand Containing Proteins AT4G35310 26.347 3.67e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Lja1g2435 Pkinase 1.9e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2435 - - gmx:100819969 1195.65