Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2433 ATGGTATCAACATCTTGTGTTAGCAATAGTCCATTTCCGATGAAAGAGGCAGCTCCGATCTCTCATTCGTATCCGGTACCTCTTGCAAAGTATGAGGAGGTTGTGGCAAATCCCAAGCTCTTCATATTTACCTTGGAGAAGCTACATGCTTCCATGGGTACCAAATTCATGATTCCTATTATTGGTGGAAAAGAACTAGATCTGTGTCGCCTCTTCATTGAAGTGACTTCTCGTGGAGGGTTTGAGAAGCTTATAAAAGAGAGAAGATGGAAAGAAGTAACTTCAGTTTTCAATTTTCCATCAACAGCCACAAATGCTTCTTTCGTGCTGCGGAAGTACTATGCTTCATTGCTTTACCACTATGAACAAATCTACTTTTTTAAAGCCAATCGATGGATCCCTCCAACTTCTGGTGCTCTGCAGAGTCACGCAGCCCCGCCAGTTCCTGCTCGAACGACACAATTTTTGCAGCCTTCTCCAGCAATTCAACCAGTTGTCTTTCATCAGTCAAGTGCTAATGCTGCTGAATTTTCTAAAGGATCTTCAGTGGTTGGAGTCATTGATGGGAAATTTGAAAGTGGGTATCTAGTTTCAGTTTCTTTAGGTTCAGATATGGTCAAAGGTGTACTCTATGAATCTCCACAAACCCCTATGTTGCCTGCATCTGCATCACATCATCAAAGCATTATAGCTAAGAACAACAATACCCCTGCTGTATTGGGTGTCCAGCGTCGCCGTCGCAGGAAGAAATCAGAAATAAAAAGGAGGGATCCTGCTCATCCAAAACCCAACCGAAGCGGCTACAATTTCTTCTTTGCTGAGCAGCATGCAAGACTAAAACTACTAAACCAAGCCAAGGACAGGGATATTAGCAGGATGATTGGAGAACTATGGAACAAGTTAAAAGAGCCTGAAAGATCAGTTTATCAAGAGAAGGCTATTAAGGATAAAGAGAGGTACCAAGCAGAAATGGAGGGTTACCGTGAGAGACTGAAGATGGGCAATGTCATCAGTGATGCTGTGCCACTGCAACAAAGGCTCCCTGAATCAGATGCATCTTTGGTGGATGTGGACATAAAATTGATTGGTTCTCCTCAAACTCCTGTGGAAAGCACTTCTAGTGGAAGTGACTATGAAGATGATGATATCAATATGGGTGCCACCTCTCCTGAAGTAGAAGTGGGTGTTGAAGCTACCTATGTGGGTTCAGACAAGCCATCACAGGATTATGAGCTTCTTCCCCAATGCCAGAGAGAAGGGGATGCTGGAGTTCAGGATGTGCAAACGATGAATGAGAGCAAGACTATGTTAGCATTAATTTAG 1323 0.4331 MVSTSCVSNSPFPMKEAAPISHSYPVPLAKYEEVVANPKLFIFTLEKLHASMGTKFMIPIIGGKELDLCRLFIEVTSRGGFEKLIKERRWKEVTSVFNFPSTATNASFVLRKYYASLLYHYEQIYFFKANRWIPPTSGALQSHAAPPVPARTTQFLQPSPAIQPVVFHQSSANAAEFSKGSSVVGVIDGKFESGYLVSVSLGSDMVKGVLYESPQTPMLPASASHHQSIIAKNNNTPAVLGVQRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKLLNQAKDRDISRMIGELWNKLKEPERSVYQEKAIKDKERYQAEMEGYRERLKMGNVISDAVPLQQRLPESDASLVDVDIKLIGSPQTPVESTSSGSDYEDDDINMGATSPEVEVGVEATYVGSDKPSQDYELLPQCQREGDAGVQDVQTMNESKTMLALI* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2433 440 SMART bright_3 36 127 IPR001606 GO:0003677
Lja1g2433 440 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 261 328 IPR009071 -
Lja1g2433 440 SMART ARID_2 32 122 - -
Lja1g2433 440 Pfam ARID/BRIGHT DNA binding domain 39 122 IPR001606 GO:0003677
Lja1g2433 440 Coils Coil 310 330 - -
Lja1g2433 440 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
Lja1g2433 440 MobiDBLite consensus disorder prediction 242 267 - -
Lja1g2433 440 Pfam HMG (high mobility group) box 261 328 IPR009071 -
Lja1g2433 440 Gene3D High mobility group box domain 244 337 IPR036910 -
Lja1g2433 440 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677
Lja1g2433 440 CDD HMGB-UBF_HMG-box 261 325 - -
Lja1g2433 440 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 2 390 - -
Lja1g2433 440 SMART hmgende2 260 329 IPR009071 -
Lja1g2433 440 SUPERFAMILY ARID-like 32 134 IPR036431 GO:0003677
Lja1g2433 440 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 2 390 - -
Lja1g2433 440 Gene3D - 28 131 IPR036431 GO:0003677
Lja1g2433 440 SUPERFAMILY HMG-box 249 332 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2433 Lja-Chr1 28048021 28053157 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2433 1 361 ARID Transcription Factor Family AT1G04880 52.116 1.05e-126 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lja1g2433 ARID 2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2433 - - mtr:MTR_7g005970 567