Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2430 ATGGCTTCATCTTTAGAGGAGCTTCTTGCAAAGGAAGGGTTCAAAGGAAGCAGAAGAGTCACAAAGGCTCGATCTTCCTTCCACCATGGTGCTTCAAGTGAGCCACTCCACTCTTTGGAAGATAGACTTTGTGTATCAGGTGATAGAATTAAAACACACAGAACAAAGTCCAATGACTCACTACATCAGTTTAGAAGTAGATTGTCAAAAAGTGATACTCACTCTGCTAAGAACCAGAGGCCAAGAGATAATGATTTTACAGGAGACAAAAATGATGAACCGTTGAAGAACGAGACTGAGAAGAAATCTTCAAGGGACTCAAACGCAGGCAAAAGATTTGATAAAAAATCATCAGAAGACAAGTCAAGGTATGGGGTGAGTGGGAAAGAAGATGGTAGATTTGATGATGTTTATTCAAACCGAGTGTCTAATGCAAAAAGAGGCAATGAAGAATATTTCAATGAACTTGTGGAAAAGGAAAAGATAGGCAAGATGCATAGCAGAAGTTCTAGTATACATATGCTTAGACTCTCGAGTGCAATTAGAACACAAGACTCGAACACGAGATCTAATAGCAAAGGCTTTGAAGATAGCAGGAGTAAAAATGGCCATCTTGCTATGAAAGCAGATTCTAATCTTCCTCTTGATGAAGTTGCTGTCCAAGCAGTAGTTTCCATTCTAAATGGATATATAAATAGTTTTCAAAAGGATGAAGATTTTCGGACTACTTTGCGCCACAACTGTTTCTCCTCCTTGAATTTTATTGAACTGGGTGAAGAGAACAATAGTGAGACCAAAGTCATTAGAAGTCTTGAGCAAGCAATTGAAACCATAGAAAAATCTGCTGAGGAACCTATTTCTGCCACATATCTGAAAAGAGCCACCATGCAGCTTAGCATTATTACAGGTTTGAGTTTAAATGATTTAAAGTATGCATGTACATGTGGGATCCCAAATTATAAGTTGTCAGCTTGTGCTCATCTTTATCTCAGTGTGGTGTATATGACACAAAGAAAAAACAAAGTGTCAGCAAAGCATCTCTTGCAAGTGTTTTGTGATTCACCTTTGCAGGCAAGGACAATTTTGTTGCCTGAACTGTGGGAGCATCTATTTGCTCCACAGTTTTCCCATTTGAAGGCATGGTTTAATAAAGAAGCTGGAATTCTAGTAGATACACCAAGCAAAACAAGAAAGCTAAGGCTTCTTCAGAAAGTGTATAATGAACATTTGGATTCTGGAACTCATATATTTGCGGTGTATTACAAAGACTGGCTCACTGAAGGGGTAGAATCTCCAACTATTCCTTCTATTTGCATTCCATCAATATCTTCTAGTGGAAGCCAGCAGGGAAGTTCACTTGGTAATTCTTCAGAGTCGTCTAGCTCTACTGAACCATTCTCACCACAGCCAATGGTCAGCAAGAAACTGTATGAATCTGTCTTTGCTAGCTCTAGTAGGCCAGAAGCCTGTGAAGTTGGTGATAATCAGGATGAAGATAGCCTAGAAAATTGTGTGAGAGGCTCTTATGGTTCAACTATTGTCAAACAAACATTAATATATGAGTCTGAAACTGTTAGATTTACAGATCAAGAAACTGAAGATTTCACTCAAAGTGGTGCACCAACTGATGCATTACATCCGCTAAATAAGGAAAGTTCTACTTCTGAAGGATCATATTTTCCGAGCATTCCACAGGAATTTATCTGTCCTCTGACTGGAAATATCTTTGAAGAACCCGTCACTCTAGAGACTGGTCAAACCTTTGAAAGAGAAGCCATGAAAGCATGGTTTGAAAATGGAAACAGAACATGCCCGATAACAAGAAATACTTTAGAATGTGTAGCCATGCCATTGACCAACCTTATTTTGAAGCGTTTGATAGATGATTGGAAGTCCGAACGGTTTAATCTCCTTCTGGATTTCGCTTCTCAAACAGTGGAAATTTCGGAGATGCTTAGGTTGAAAAAGAAGGATGAAGCTGCTGTTTTCAAGTTAGAGGGTCTTCTCTCCTCTTTGAAAGAAGAGGATAAATCCACTTATGCAAAGCATCTCATCTCTATAGGTGTTCTTTCATTTCTCTTTAGGAGGTTTGAACTGGGAAATATGGAGGAGAAATCACATGTCATAGCACTCTTGCTAAATTTTATTCGTGCAGACTCAAGTTGCATATATCAGATAGCAAGAAGTGTTAACAGAAAATGTCTTCTAGAGCTTCTTCATAGCAAGGTTACCCCAATAACAAACGCAATACTACTCCTTACTGAACTTGTATCTATGAAGAGGAGAACAGATGTTACTTCATTCATAAGTGGCTTGGTGGGTGAAGATGTATTTAGTACAATGCATGTTCTGCTCACGTATCTCGAGAATCCTTCTCTACTTGAAAAGCCTCTAATTGCTGTCCTTTTGTTACACTTTGGTCTACTGGTTGAGCCTGATAGGTTTAGCATATACAGAGAAGTGGCTGTGAATGCCATTGCAGTGGCACTTGACGCCAGCTTAAACGATGAGAAGGCCCGAAAAAAGTGTTGCAGAGCACTTCTAATCTTATGTGGCCATTTTTCTTCTGAAGGGAAGACAACGACCAAGACTAGCATCTTAAAGCATGCAGGCTATAATAATGATGACTCAGAATTAAAACCTCCTAGACATAAAGAAGAGGGTCAACAATCATATGTAACCATTTCATCAGAAGATGACGAAGAAAGGGGTGAAGAGTTGCTAATGAACTTGTTAGAATCATTAATTGGTGATGGGGAAAGCCCATTTCTAAAGACCATATCAAGATGTTTAGATTCTAGACACCTAGACTTGGTGAGGACATGCCTAATAACTGTTACATGGTTGAGCTCCTCACTATCAACACTATTTCATGCTGGATTTCATCTTCGCGCCTTCTTAGCTATCAGCTCTCAGTTGAAAAGAATCTTGGAAAATGGAGAAATTGAACTCAAGATTCTTTCATCTGTGTCCTTGCTTAACTTCAGTAAAATATCAGAATGCAGAATGATTTTGAAGACAATGGCAGAAGATATTGCTCCCCTTCTTTGTGGACTTGTTGATGTAACATGGACTGCAAAACAGTTGCATGCCATTGTGTCTAGGGAGAATCTGTAG 3117 0.3908 MASSLEELLAKEGFKGSRRVTKARSSFHHGASSEPLHSLEDRLCVSGDRIKTHRTKSNDSLHQFRSRLSKSDTHSAKNQRPRDNDFTGDKNDEPLKNETEKKSSRDSNAGKRFDKKSSEDKSRYGVSGKEDGRFDDVYSNRVSNAKRGNEEYFNELVEKEKIGKMHSRSSSIHMLRLSSAIRTQDSNTRSNSKGFEDSRSKNGHLAMKADSNLPLDEVAVQAVVSILNGYINSFQKDEDFRTTLRHNCFSSLNFIELGEENNSETKVIRSLEQAIETIEKSAEEPISATYLKRATMQLSIITGLSLNDLKYACTCGIPNYKLSACAHLYLSVVYMTQRKNKVSAKHLLQVFCDSPLQARTILLPELWEHLFAPQFSHLKAWFNKEAGILVDTPSKTRKLRLLQKVYNEHLDSGTHIFAVYYKDWLTEGVESPTIPSICIPSISSSGSQQGSSLGNSSESSSSTEPFSPQPMVSKKLYESVFASSSRPEACEVGDNQDEDSLENCVRGSYGSTIVKQTLIYESETVRFTDQETEDFTQSGAPTDALHPLNKESSTSEGSYFPSIPQEFICPLTGNIFEEPVTLETGQTFEREAMKAWFENGNRTCPITRNTLECVAMPLTNLILKRLIDDWKSERFNLLLDFASQTVEISEMLRLKKKDEAAVFKLEGLLSSLKEEDKSTYAKHLISIGVLSFLFRRFELGNMEEKSHVIALLLNFIRADSSCIYQIARSVNRKCLLELLHSKVTPITNAILLLTELVSMKRRTDVTSFISGLVGEDVFSTMHVLLTYLENPSLLEKPLIAVLLLHFGLLVEPDRFSIYREVAVNAIAVALDASLNDEKARKKCCRALLILCGHFSSEGKTTTKTSILKHAGYNNDDSELKPPRHKEEGQQSYVTISSEDDEERGEELLMNLLESLIGDGESPFLKTISRCLDSRHLDLVRTCLITVTWLSSSLSTLFHAGFHLRAFLAISSQLKRILENGEIELKILSSVSLLNFSKISECRMILKTMAEDIAPLLCGLVDVTWTAKQLHAIVSRENL* 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2430 1038 MobiDBLite consensus disorder prediction 1 136 - -
Lja1g2430 1038 SUPERFAMILY ARM repeat 675 1022 IPR016024 -
Lja1g2430 1038 MobiDBLite consensus disorder prediction 873 887 - -
Lja1g2430 1038 CDD RING-Ubox_PUB 567 608 IPR045210 -
Lja1g2430 1038 SUPERFAMILY RING/U-box 550 634 - -
Lja1g2430 1038 MobiDBLite consensus disorder prediction 448 470 - -
Lja1g2430 1038 MobiDBLite consensus disorder prediction 179 202 - -
Lja1g2430 1038 ProSiteProfiles U-box domain profile. 562 637 IPR003613 GO:0004842|GO:0016567
Lja1g2430 1038 MobiDBLite consensus disorder prediction 535 557 - -
Lja1g2430 1038 ProSiteProfiles Zinc finger SWIM-type profile. 298 336 IPR007527 GO:0008270
Lja1g2430 1038 SMART Ubox_2 566 630 IPR003613 GO:0004842|GO:0016567
Lja1g2430 1038 PANTHER OS04G0584500 PROTEIN 1 537 - -
Lja1g2430 1038 PANTHER OS04G0584500 PROTEIN 549 1036 - -
Lja1g2430 1038 MobiDBLite consensus disorder prediction 448 469 - -
Lja1g2430 1038 Pfam U-box domain 563 634 IPR003613 GO:0004842|GO:0016567
Lja1g2430 1038 MobiDBLite consensus disorder prediction 873 896 - -
Lja1g2430 1038 PANTHER OS04G0584500 PROTEIN 1 537 - -
Lja1g2430 1038 PANTHER OS04G0584500 PROTEIN 549 1036 - -
Lja1g2430 1038 MobiDBLite consensus disorder prediction 41 136 - -
Lja1g2430 1038 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 562 636 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2430 Lja-Chr1 27992690 27997394 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2430 542 686 U-box Gene Family AT5G42340 35.374 7.49e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2430 - - lja:Lj1g3v3329610.1 1964.5