Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2423 ATGGATGGTATTGGTAATGGTATTGGTATGATGAAGAAGAGTAAGAGCAAAAGGCTGGGAAAAGCTGCAGGGAGTAAGAAAGGAAGCCTGATTACAAAAACATGGGAGCGATGCAAGTCCATAGGACGAGGTACAACCACAAGGATCACAAGGAGCAAATCATGGCCAAGCCGTGGCAAAAGTACTACTGTTGTGGCCCCAGAAGGTTGCTTCTCGGTCTATGTGGGGCAACAAATGCAAAGGTTCGTGATCAAAACTGAATACGTGAACCACCCTTTGTTTAAGATGTTGCTTGAAGAAGCTGAGTCAGAATATGGTTATAGCAGCCAAGGCCCTATAGTCCTTCCTTGCAACGTTGATGTGTTTTACAAGGTGTTGATGGAAATGGATGAAGAAACGTCTACTCCTGATCAGCCTCAGCCTCATGGATGTGCTTTTGTGAAACAACGTTCTCGCTCCTCCTATCATCTTCCTAGCCCTTCCCGAATGCTTGCCATAAACCACTTGTGA 510 0.4549 MDGIGNGIGMMKKSKSKRLGKAAGSKKGSLITKTWERCKSIGRGTTTRITRSKSWPSRGKSTTVVAPEGCFSVYVGQQMQRFVIKTEYVNHPLFKMLLEEAESEYGYSSQGPIVLPCNVDVFYKVLMEMDEETSTPDQPQPHGCAFVKQRSRSSYHLPSPSRMLAINHL* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2423 169 MobiDBLite consensus disorder prediction 1 24 - -
Lja1g2423 169 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 27 149 IPR003676 GO:0009733
Lja1g2423 169 Pfam Auxin responsive protein 38 126 IPR003676 GO:0009733
Lja1g2423 169 PANTHER SMALL AUXIN-UP RNA-RELATED 27 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2423 Lja-Chr1 27951115 27952466 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2423 22 138 Calmodulin-binding Proteins AT5G20810 33.333 7.07e-17 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2423 K14488 - gmx:100777217 182.185