Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2419 ATGGAGAAGGTGAACTTTGTGAAGAATGGTGAGCTTAGATTGCCTCCTGGATTCCGTTTCCACCCGACTGATGAGGAACTGGTTGTTCAATACTTGAAGCGGAAGATCTTCTCCTGCCCCTTGCCAGCCTCTATCATTCCTGAGGTTGATCTTTGCAAGTCTGACCCTTGGGATTTGCCAGGTGATTCTGAGCGAGAGAGGTATTTCTTCAGCATGAAAGAGGCTAAATATCCGAATGGGAATCGATCCAACAGAGCCACCAGCTCAGGTTACTGGAAGGCAACTGGGTTGGACAAACAGATTTCAACTTCTAAAGGGAACCAAGTTGTGGGGATGAAAAAGACTCTGGTTTTCTACACAGGCAAGCCACCTCATGGATCCAGAACTGATTGGATCATGCACGAATATCGCCTCCTTACCAATACCAATACCACTACCACCCAGGGGCATGTGCAGGTTCCCATGGAAAATTGGGTTCTGTGTCGCATATTTTTGAAAAGGAGAGGTGGTGTCAAAAACGGGGAAGAGGAACACTCTTTTAATAACATTAGTCTCAAGGCGGGCAAGGCGGGTAGGGTAGTTTTCTATGACTTCTTGGCTCAGAACAAGATTAATCCTGCTTCCTCTTCTTCATCCTCTGCCACCAGTGGAATCACCGACAATAATGAATCCGATGAGAGCAGCACCTCCAATATTTTGACTAGATGA 708 0.4647 MEKVNFVKNGELRLPPGFRFHPTDEELVVQYLKRKIFSCPLPASIIPEVDLCKSDPWDLPGDSERERYFFSMKEAKYPNGNRSNRATSSGYWKATGLDKQISTSKGNQVVGMKKTLVFYTGKPPHGSRTDWIMHEYRLLTNTNTTTTQGHVQVPMENWVLCRIFLKRRGGVKNGEEEHSFNNISLKAGKAGRVVFYDFLAQNKINPASSSSSSATSGITDNNESDESSTSNILTR* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2419 235 MobiDBLite consensus disorder prediction 206 235 - -
Lja1g2419 235 Gene3D NAC domain 23 169 IPR036093 GO:0003677|GO:0006355
Lja1g2419 235 PANTHER NAC DOMAIN-CONTAINING PROTEIN 83-LIKE 1 229 - -
Lja1g2419 235 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 229 - -
Lja1g2419 235 Pfam No apical meristem (NAM) protein 15 138 IPR003441 GO:0003677|GO:0006355
Lja1g2419 235 ProSiteProfiles NAC domain profile. 14 166 IPR003441 GO:0003677|GO:0006355
Lja1g2419 235 SUPERFAMILY NAC domain 10 166 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2419 Lja-Chr1 27879753 27883086 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2419 1 230 NAC Transcription Factor Family AT5G13180 56.522 2.69e-95 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja1g2419 NAM 1.2e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2419 - - gmx:100170709 347.051