Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lja1g2415 | ATGAGCAACTCTCACAGTCAAACTCATCATAACCTGCATCATCTATCATCATCTTCATCTTCTTCGAAACAGCAACAGCGGTGTCGCGGAAAGAAGCGCACTAAGTTGATGAGAATGAATAATACGGAGGAGGATGAAGAAGATCAGGAAGAGGAGTTGAAGGTGAAATGCTGTACGGAGTGCGGGAAGAAGTTCTGGTCTTGGAAGGCTCTTTTTGGCCACATGCGCTGCCATCCTGAGCGCCAGTGGCGAGGGATTAATCCGCCTCCCAATTACCGACGACCACCACCGCAGCAACCACAAATGCAAATGGTGATGACCCAGGAAGACCACGAGGTTGCTGCTTGTCTTCTCTTGCTTGCAAATGCAAAAGGAGAAATAATAACTACTTCTGAAACGGTTTCGTGCAGTCATCATCATGAAGAGGATTGTTTCGTTAGTCGCAACAGCAACAGCAGCAAGTGCAGTGGAGATGCAGTACTGTTTGGGGGGTCATCAGGGTCAGGAGGAGGAGGGCACAAGTGCAGCATATGTCTCAGGGTGTTTTCCCGTGGGCAGGCGCTTGGTGGTCACAAAAGGTGTCATTGGGAGAAAACTGCAGGATCAGGAGGTGGTGATCCTCTTCCTCTTCTTCCTCCTCCTCATGCTTCTGTTGCTCTCGACTTGAATTTACCACCCTCTGACTCTGATGCCTCCTCTGATCCTATTTCCCCCCTCACTCTCGATTTGAGTTTGAGACTTTAG | 744 | 0.4933 | MSNSHSQTHHNLHHLSSSSSSSKQQQRCRGKKRTKLMRMNNTEEDEEDQEEELKVKCCTECGKKFWSWKALFGHMRCHPERQWRGINPPPNYRRPPPQQPQMQMVMTQEDHEVAACLLLLANAKGEIITTSETVSCSHHHEEDCFVSRNSNSSKCSGDAVLFGGSSGSGGGGHKCSICLRVFSRGQALGGHKRCHWEKTAGSGGGDPLPLLPPPHASVALDLNLPPSDSDASSDPISPLTLDLSLRL* | 248 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lja1g2415 | 247 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 55 | 83 | IPR013087 | - | |
Lja1g2415 | 247 | MobiDBLite | consensus disorder prediction | 205 | 236 | - | - | |
Lja1g2415 | 247 | PANTHER | ZINC FINGER PROTEIN ZAT2-RELATED | 10 | 247 | - | - | |
Lja1g2415 | 247 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Lja1g2415 | 247 | Pfam | C2H2-type zinc finger | 57 | 80 | - | - | |
Lja1g2415 | 247 | Pfam | C2H2-type zinc finger | 173 | 197 | - | - | |
Lja1g2415 | 247 | Coils | Coil | 36 | 56 | - | - | |
Lja1g2415 | 247 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 175 | 195 | IPR013087 | - | |
Lja1g2415 | 247 | PANTHER | ZINC FINGER PROTEIN ZAT2-RELATED | 10 | 247 | - | - | |
Lja1g2415 | 247 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 57 | 78 | IPR013087 | - | |
Lja1g2415 | 247 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 173 | 200 | IPR013087 | - | |
Lja1g2415 | 247 | SMART | c2h2final6 | 56 | 78 | IPR013087 | - | |
Lja1g2415 | 247 | SMART | c2h2final6 | 173 | 195 | IPR013087 | - | |
Lja1g2415 | 247 | MobiDBLite | consensus disorder prediction | 1 | 49 | - | - | |
Lja1g2415 | 247 | SUPERFAMILY | beta-beta-alpha zinc fingers | 56 | 195 | IPR036236 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lja1g2415 | Lja-Chr1 | 27840322 | 27841065 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lja1g2415 | 58 | 247 | C2H2 Transcription Factor Family | AT4G35280 | 45.291 | 2.54e-51 | 167 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lja1g2415 | - | - | pvu:PHAVU_008G291700g | 158.303 |