Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2415 ATGAGCAACTCTCACAGTCAAACTCATCATAACCTGCATCATCTATCATCATCTTCATCTTCTTCGAAACAGCAACAGCGGTGTCGCGGAAAGAAGCGCACTAAGTTGATGAGAATGAATAATACGGAGGAGGATGAAGAAGATCAGGAAGAGGAGTTGAAGGTGAAATGCTGTACGGAGTGCGGGAAGAAGTTCTGGTCTTGGAAGGCTCTTTTTGGCCACATGCGCTGCCATCCTGAGCGCCAGTGGCGAGGGATTAATCCGCCTCCCAATTACCGACGACCACCACCGCAGCAACCACAAATGCAAATGGTGATGACCCAGGAAGACCACGAGGTTGCTGCTTGTCTTCTCTTGCTTGCAAATGCAAAAGGAGAAATAATAACTACTTCTGAAACGGTTTCGTGCAGTCATCATCATGAAGAGGATTGTTTCGTTAGTCGCAACAGCAACAGCAGCAAGTGCAGTGGAGATGCAGTACTGTTTGGGGGGTCATCAGGGTCAGGAGGAGGAGGGCACAAGTGCAGCATATGTCTCAGGGTGTTTTCCCGTGGGCAGGCGCTTGGTGGTCACAAAAGGTGTCATTGGGAGAAAACTGCAGGATCAGGAGGTGGTGATCCTCTTCCTCTTCTTCCTCCTCCTCATGCTTCTGTTGCTCTCGACTTGAATTTACCACCCTCTGACTCTGATGCCTCCTCTGATCCTATTTCCCCCCTCACTCTCGATTTGAGTTTGAGACTTTAG 744 0.4933 MSNSHSQTHHNLHHLSSSSSSSKQQQRCRGKKRTKLMRMNNTEEDEEDQEEELKVKCCTECGKKFWSWKALFGHMRCHPERQWRGINPPPNYRRPPPQQPQMQMVMTQEDHEVAACLLLLANAKGEIITTSETVSCSHHHEEDCFVSRNSNSSKCSGDAVLFGGSSGSGGGGHKCSICLRVFSRGQALGGHKRCHWEKTAGSGGGDPLPLLPPPHASVALDLNLPPSDSDASSDPISPLTLDLSLRL* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2415 247 ProSiteProfiles Zinc finger C2H2 type domain profile. 55 83 IPR013087 -
Lja1g2415 247 MobiDBLite consensus disorder prediction 205 236 - -
Lja1g2415 247 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 10 247 - -
Lja1g2415 247 MobiDBLite consensus disorder prediction 1 25 - -
Lja1g2415 247 Pfam C2H2-type zinc finger 57 80 - -
Lja1g2415 247 Pfam C2H2-type zinc finger 173 197 - -
Lja1g2415 247 Coils Coil 36 56 - -
Lja1g2415 247 ProSitePatterns Zinc finger C2H2 type domain signature. 175 195 IPR013087 -
Lja1g2415 247 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 10 247 - -
Lja1g2415 247 ProSitePatterns Zinc finger C2H2 type domain signature. 57 78 IPR013087 -
Lja1g2415 247 ProSiteProfiles Zinc finger C2H2 type domain profile. 173 200 IPR013087 -
Lja1g2415 247 SMART c2h2final6 56 78 IPR013087 -
Lja1g2415 247 SMART c2h2final6 173 195 IPR013087 -
Lja1g2415 247 MobiDBLite consensus disorder prediction 1 49 - -
Lja1g2415 247 SUPERFAMILY beta-beta-alpha zinc fingers 56 195 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2415 Lja-Chr1 27840322 27841065 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2415 58 247 C2H2 Transcription Factor Family AT4G35280 45.291 2.54e-51 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2415 - - pvu:PHAVU_008G291700g 158.303