Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2413 ATGGAGATGGCACACAGCCACCGGCTTCCTCTCAGGAGCATCAATCAGAATATTATGGACAAGGACAAGCCTTGTATTCCCAATAAAGTGTCTCTTTCTGGGAACCAGAACCTGTTAGCCTCGACCCCGAGTAACCAGTTAGATTCTGCTATCATAGATAATGGTGAGTACGAGGATGCAGTTCCAGTATTTGTGAAGCACACTGAAGCGATGCTAGATGAAATTGACATGATAGAGGAAATTGAAATGGAAGATGTGGAGGAACCTATTATGGACATCGACGCTTGTGATAGGAATGATCCGCTTGCAGTTGTTGAGTACATAGATGATATCTACTGTTTTTACAAGAAAACTGAGAAATCTAGCTGCGTCTCTCCAGCTTACATGACTAGTCAGTTTGACATTAATGAGAAGATGAGGGCCATTCTTATGGACTGGCTTATTGAGGTTCACTATAAATTTGAGCTTTTGGAGGAGACCTTGTTTCTCACTGTCAATCTCATAGACAGGTTCTTGGCATGTCAGACAGTGATAAGAAAAAAGCTTCAGCTGGTTGGTGTAACCGCCATGCTAATAGCTTGCAAGTATGAGGAGGTATCAGTCCCCACAGTTGAGGATTTTATTCTGATAACAGACAAGGCATACACAAGAAATGAAGTTTTGAATATGGAGAAGCTAATGGTGAACACCTTGCAATTCAACTTGTCTGTGCCTACTCCGTATGTGTTTATGAGAAGATTTCTTAAGGCAGCTTATTCTGACAAAAAGCTGGAGCTCTTGTCCTTCTTCTTGATCGAACTTTGCTTGGTGGAGTGCAAAATGCTGAAGTTTTCACCATCTCTGCTAGCTGCTGCAGCCATATACACAGCTCAATGCAGTCTATACCAGTTTAAGCAATGGACTAAGACCAGCGAGTGGTATACTGGTTACTCAGAAGAGCAGCTTCTAGAATGCTCAAGGCTGATGGTTACTTACCATCAGAAAGCTGGATCAGGGAAACTCACTGGAGTATATAGGAAGTACAGTTCGTTGAAGTATGGTTGTGCTGCAAAAGTAGAACCAGCCCATTTCGTACTGGATGGTAATTAA 1089 0.4233 MEMAHSHRLPLRSINQNIMDKDKPCIPNKVSLSGNQNLLASTPSNQLDSAIIDNGEYEDAVPVFVKHTEAMLDEIDMIEEIEMEDVEEPIMDIDACDRNDPLAVVEYIDDIYCFYKKTEKSSCVSPAYMTSQFDINEKMRAILMDWLIEVHYKFELLEETLFLTVNLIDRFLACQTVIRKKLQLVGVTAMLIACKYEEVSVPTVEDFILITDKAYTRNEVLNMEKLMVNTLQFNLSVPTPYVFMRRFLKAAYSDKKLELLSFFLIELCLVECKMLKFSPSLLAAAAIYTAQCSLYQFKQWTKTSEWYTGYSEEQLLECSRLMVTYHQKAGSGKLTGVYRKYSSLKYGCAAKVEPAHFVLDGN* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2413 362 PANTHER CYCLIN-B2-3-RELATED 41 356 - -
Lja1g2413 362 CDD CYCLIN 139 228 IPR013763 -
Lja1g2413 362 SUPERFAMILY Cyclin-like 99 235 IPR036915 -
Lja1g2413 362 SMART Cyclin_C_2 238 355 IPR004367 -
Lja1g2413 362 CDD CYCLIN 236 323 IPR013763 -
Lja1g2413 362 PANTHER CYCLINS 41 356 IPR039361 -
Lja1g2413 362 SUPERFAMILY Cyclin-like 237 355 IPR036915 -
Lja1g2413 362 Gene3D - 110 351 - -
Lja1g2413 362 ProSitePatterns Cyclins signature. 140 171 IPR006671 -
Lja1g2413 362 Gene3D - 124 236 - -
Lja1g2413 362 Pfam Cyclin, C-terminal domain 238 353 IPR004367 -
Lja1g2413 362 PIRSF Cyclin_A_B_D_E 16 362 IPR039361 -
Lja1g2413 362 SMART cyclin_7 145 229 IPR013763 -
Lja1g2413 362 SMART cyclin_7 242 324 IPR013763 -
Lja1g2413 362 Pfam Cyclin, N-terminal domain 110 236 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2413 Lja-Chr1 27831291 27833553 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2413 41 359 Core Cell Cycle Gene Families AT1G20610 65.244 1.26e-156 445
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2413 K21777 - gmx:100812029 524.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2413 1 27831291 27833553 Lja1g2413 1 27831291 27833553 ECH