LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja1g2413	ATGGAGATGGCACACAGCCACCGGCTTCCTCTCAGGAGCATCAATCAGAATATTATGGACAAGGACAAGCCTTGTATTCCCAATAAAGTGTCTCTTTCTGGGAACCAGAACCTGTTAGCCTCGACCCCGAGTAACCAGTTAGATTCTGCTATCATAGATAATGGTGAGTACGAGGATGCAGTTCCAGTATTTGTGAAGCACACTGAAGCGATGCTAGATGAAATTGACATGATAGAGGAAATTGAAATGGAAGATGTGGAGGAACCTATTATGGACATCGACGCTTGTGATAGGAATGATCCGCTTGCAGTTGTTGAGTACATAGATGATATCTACTGTTTTTACAAGAAAACTGAGAAATCTAGCTGCGTCTCTCCAGCTTACATGACTAGTCAGTTTGACATTAATGAGAAGATGAGGGCCATTCTTATGGACTGGCTTATTGAGGTTCACTATAAATTTGAGCTTTTGGAGGAGACCTTGTTTCTCACTGTCAATCTCATAGACAGGTTCTTGGCATGTCAGACAGTGATAAGAAAAAAGCTTCAGCTGGTTGGTGTAACCGCCATGCTAATAGCTTGCAAGTATGAGGAGGTATCAGTCCCCACAGTTGAGGATTTTATTCTGATAACAGACAAGGCATACACAAGAAATGAAGTTTTGAATATGGAGAAGCTAATGGTGAACACCTTGCAATTCAACTTGTCTGTGCCTACTCCGTATGTGTTTATGAGAAGATTTCTTAAGGCAGCTTATTCTGACAAAAAGCTGGAGCTCTTGTCCTTCTTCTTGATCGAACTTTGCTTGGTGGAGTGCAAAATGCTGAAGTTTTCACCATCTCTGCTAGCTGCTGCAGCCATATACACAGCTCAATGCAGTCTATACCAGTTTAAGCAATGGACTAAGACCAGCGAGTGGTATACTGGTTACTCAGAAGAGCAGCTTCTAGAATGCTCAAGGCTGATGGTTACTTACCATCAGAAAGCTGGATCAGGGAAACTCACTGGAGTATATAGGAAGTACAGTTCGTTGAAGTATGGTTGTGCTGCAAAAGTAGAACCAGCCCATTTCGTACTGGATGGTAATTAA	1089	0.4233	MEMAHSHRLPLRSINQNIMDKDKPCIPNKVSLSGNQNLLASTPSNQLDSAIIDNGEYEDAVPVFVKHTEAMLDEIDMIEEIEMEDVEEPIMDIDACDRNDPLAVVEYIDDIYCFYKKTEKSSCVSPAYMTSQFDINEKMRAILMDWLIEVHYKFELLEETLFLTVNLIDRFLACQTVIRKKLQLVGVTAMLIACKYEEVSVPTVEDFILITDKAYTRNEVLNMEKLMVNTLQFNLSVPTPYVFMRRFLKAAYSDKKLELLSFFLIELCLVECKMLKFSPSLLAAAAIYTAQCSLYQFKQWTKTSEWYTGYSEEQLLECSRLMVTYHQKAGSGKLTGVYRKYSSLKYGCAAKVEPAHFVLDGN*	363

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lja1g2413	362	PANTHER	CYCLIN-B2-3-RELATED	41	356	-	-
Lja1g2413	362	CDD	CYCLIN	139	228	IPR013763	-
Lja1g2413	362	SUPERFAMILY	Cyclin-like	99	235	IPR036915	-
Lja1g2413	362	SMART	Cyclin_C_2	238	355	IPR004367	-
Lja1g2413	362	CDD	CYCLIN	236	323	IPR013763	-
Lja1g2413	362	PANTHER	CYCLINS	41	356	IPR039361	-
Lja1g2413	362	SUPERFAMILY	Cyclin-like	237	355	IPR036915	-
Lja1g2413	362	Gene3D	-	110	351	-	-
Lja1g2413	362	ProSitePatterns	Cyclins signature.	140	171	IPR006671	-
Lja1g2413	362	Gene3D	-	124	236	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja1g2413	Lja-Chr1	27831291	27833553	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja1g2413	41	359	Core Cell Cycle Gene Families	AT1G20610	65.244	1.26e-156	445

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja1g2413	K21777		-	gmx:100812029	524.242

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja1g2413	1	27831291	27833553	Lja1g2413	1	27831291	27833553	ECH

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