Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2405 ATGTTAATACAACGTTCTGGTTTATGTTATGTATCTGATGATGGGGAAGATGTTCTTTGTGACCGGATGCCTAGTGGTAAAACTTGGCAGGTGTATTCGAAAGGAAATAAGCACCCTTTTGACTGGTGTAGAAAAGCTGAACCAACGGAAGAGGATAGAAGGAAAACTGGTGATTCTTACAACTCAAACTGTTTAAGTAGCTTTGGCCGGCCATCAACTGCTGGTATAATGACTGAAAATAGTGCACCTAATATGGTATACAGGAGAAAGAAGCTACGCAAGGGCTCGGTTGCCTCTGCTTTTAATCTAGGATCAACTGATATGCGGACAAGTGCCAATTGCCCTTCAGTCATAAGTTCCTCTGGGCATTTATCATCAGCTGAGGATCAGTCATCTGGCTTTCAAATCAAGCACAAATTTGAAAAGGTTAAAAATCCTACTGTCCCTTCTGTCTTATTTGATGGAGTAGCCAAGGATACCACACAGAAAAACTTAGGTTTTGACAGTGTAAATGACAGTTGCTCATCTTCTAAGTCAAATATGGAACTTGTTTCAGATTCCTTAGAGATTGAAATGGATGAAACTGGTGAATGCTCCTCCTCTGATGTAATAGTTATGGATGCTACAAGGGAGGAATTGACAGAAATGGATTTCTGCATTAACATTTTAAAAAGCCATGGACTTCTTAAAGGAGATTCTGTTGCAAATAATGTGGCTTCCAGGGAAGGTGCTATTACCCATGGTAATAGTTACTGTTCCAGGTCATGCAAAATATGCGGTCATTTGGACAGTTCATTGAACATGCTTTTATGTGATCATTGTGAAGATTCATATCATCCATCTTGCTACAATCCTCGTTTGAAAAAATTGCCAATTGACGAGTGGTTTTGTCATTCATGTCTCAAAAAAAGGCAGAAAGTTCTAAAGGAGACAATGATCAGATCACCAGGTATCGCAAGTAAAATGGCCAAATGTAGAACTGCCTCAGTTAAGGATGGATTGAATCCCATTCTATTGATGTTGAGAGACAATGAGCCATATAAGTCTGACGTGCGGGTTGGTAAGGGTTTTCAAGCAGAAGTATTTGACTGGTCAGGCCCAATAAGAAGTGATGAAGATGACCTTCCTGAACCTTTAGAAATTAAACCTTCAGAATTTTCTAGACTACAGGAAGAGGATATGAGAAATCCAACTAAACTCAGTTCCATTGGTAATTGGCTTCAATGTCAGGAGGTTGTAGATAGAGCCAATGGAACTATATGTGGAAAGTGGCGCAGGGCTCCACTTTTTGAGGTTCAAACTGATGAGTGGGAGTGCTTCTGTGCTATTCATTGGGATCCATCTCATGCTGATTGTGCTGTACCTCAGGAGGTGGAAACAGATCAAGTTTTGAAGCAACTTAAGTACATAGAAATGCTGAGGCCACGACTTGCTTCTAAACAGAGAAAATCAGATAGCACAGCATAA 1467 0.4022 MLIQRSGLCYVSDDGEDVLCDRMPSGKTWQVYSKGNKHPFDWCRKAEPTEEDRRKTGDSYNSNCLSSFGRPSTAGIMTENSAPNMVYRRKKLRKGSVASAFNLGSTDMRTSANCPSVISSSGHLSSAEDQSSGFQIKHKFEKVKNPTVPSVLFDGVAKDTTQKNLGFDSVNDSCSSSKSNMELVSDSLEIEMDETGECSSSDVIVMDATREELTEMDFCINILKSHGLLKGDSVANNVASREGAITHGNSYCSRSCKICGHLDSSLNMLLCDHCEDSYHPSCYNPRLKKLPIDEWFCHSCLKKRQKVLKETMIRSPGIASKMAKCRTASVKDGLNPILLMLRDNEPYKSDVRVGKGFQAEVFDWSGPIRSDEDDLPEPLEIKPSEFSRLQEEDMRNPTKLSSIGNWLQCQEVVDRANGTICGKWRRAPLFEVQTDEWECFCAIHWDPSHADCAVPQEVETDQVLKQLKYIEMLRPRLASKQRKSDSTA* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2405 488 ProSiteProfiles Zinc finger PHD-type profile. 253 303 IPR019787 -
Lja1g2405 488 PANTHER HISTONE ACETYLTRANSFERASE 12 484 - -
Lja1g2405 488 PANTHER REMODELING AND SPACING FACTOR 1 12 484 - -
Lja1g2405 488 Gene3D - 404 469 - -
Lja1g2405 488 ProSiteProfiles Zinc finger CW-type profile. 400 460 IPR011124 GO:0008270
Lja1g2405 488 Pfam PHD-finger 256 302 IPR019787 -
Lja1g2405 488 SMART PHD_3 255 301 IPR001965 -
Lja1g2405 488 ProSitePatterns Zinc finger PHD-type signature. 256 300 IPR019786 -
Lja1g2405 488 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 168 313 IPR013083 -
Lja1g2405 488 SUPERFAMILY FYVE/PHD zinc finger 239 306 IPR011011 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2405 256 301 C2H2 Transcription Factor Family AT3G01460 43.478 2.96e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lja1g2405 PHD 7.5e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2405 - - gmx:100800660 754.207