Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2398 ATGTTGACAGAAAGAGAGAGACGTGGTTACTGTATTGTGAGCAACTTCATTGATTCAGTGCAGAAGGCATTTTGCCTAGGAGGAACAATGAAGCAATCTGTTAGCGATCCAAACCTGTTGAAGACGACGACGAAGACTCACATGATCTCACCGTCACGATCTTCCAAGTTAATTGTTCGAATTCGAAAGAAAAGCAGCGCTCGATCCTTCAACAACAACATTCAGGAGCAGGAGCAGGAGGTCACAGATCATGACATGTTTTCTCCCAACTCTAACAGCCCATACTACAAGGGTCTCACTGATCAATCCCTTGCTATCTTGGACGATGCTGCTTCTTCTTCTCCTTCTCCACCTCCTTACTCTCCTTTCTATAGTCCTTACTACAAAGGCCTTACTGATTACACCCTTGCTATTCCTTCTCCTAACTCGCCTACCCATCACAATAATATCATCAATCCTCTTCCTAATTCCAACACACACGAGTCCAGTCCATACTATAGGGGTCTCATTGATTATTCCCTTGCACTTCATGGATCCTCATCCACTCACTCATCACCACCAAACATGTTCCATGCTCATGCTCATGCTGATATATCCTTTATAATTGAACATGATCCTTTGATGGAGAAAGTAGAATCAGCAGCAGCAATTCAGGTTGATGATAAAACAGTTTTGGAGTTGGTCCCAGAGGAGGATGCTAGTTTGGAAATTGAACAAGAGAAGCCTTTGAGAGAGAGTTCAGGATCAGATCAGGAAAGCAAGATTGAGGAAGCGATTTCGGAGGAGATCATCATGATGGACTTGATCACAGATGATGATGTGATTCAAGAGGAGAAGCCATTGAGGGAGAGAGTATCAGAGGCAGCTGATGATGAGGTTGAGAAAATTGTGTCAGATAATGAAAATAACAATGCAGAAAAAATAATTTTGGAGGATGATGGGTTGGTGATTGAAAAGAAGAAGCCATTGAGATTGAGGGAGAGAGTGTCAGAAGCAAGTAATGCTTATGAGGAAGGAAATGAGTACCAGTACACATGGGCAACCAAACACCAGCCAGTGACCTTAGAAGACTTCATATGCAACAGAGATACAGCGCTTAACCTCAAAGCATTGATAAAAGGAGGGTGCGGCTGCAATCATTTTATATTTGAAGGACCATCAAATGCAGGAAAGAGATCCATGATACGGGCTATGCTTCGAGAAGTGTTTGGTGCTGACAGAGTGCAGGTCACAGAAGAAGTGAAAGAGTTCAACATTAAGGGAGAAATGGTTGATAATTTGAAAGTGCGGATAAAGAAATCATTGAGTCATATTGAGCTGAATCTCTCAGAAACAAAGGGATATGAAAAGCATGTAGTTGATGATTTATTCAAGGAAACATATGGTAGTAAGACCATAAACAACTCACTGCCTTGTAGACCAGAAAATTGCCAAGCAATCATTTTGTACGAAGCCGAGAAGCTATCGATAGAAACATTGTTGTATATTAAGTGGCTGCTGGAAAAGTATAAAGGGTGTAGCAAGGTCTTCTTTTGTTGCTCTGATCAATCAAAGCTCCAACATGTCAAATCGCTTTGCACCACTGTCCGGCTATCATCACCAACCAGCGAAGAGATTGTTAAGATTTTGGAACATATTGGAGAAGAAGAAGGAATAAAACTATCACGGGAATTTGTCAAAAGGTTAATTTTGAGGTCCAAAAACAATCTCCGCCAATCTATTCGTGCATTGGAGGCTACTTGCCGAAACAAGGATATCCTCAAAGACGACGATTTAATTTTAACAGGATGGGAGGATGATATTCTGAACATTGCTAAAAACATAATAGAAGAGCAGAGTCCAAGACAGTTGTACGTGATTCGTAGAAAGCTTCAATCTCTTATGATTCATGATGTGCCTCCTGACTTTATTTACAAGTCTTTGGTGGCAGAGTTAACGAATCTAGTTGATGACTCACTACGCCCAGGGGTTGCAAAACTCGACAAGGAGTACAGCAAAGGTTGTGAAATCATGTTTGAAAGCGTGAAGCAGCTGGGTGATGGTGAAAACAAGTATCAAGTAACAAAAAAGAATGCGATAAACTACTTAAAAGTTGAAGAATTTATAGCGAAATTCATGAGCTGCTACATGAATTGTGTAAAGAAGTTGTCGATGGCTTGA 2160 0.4097 MLTERERRGYCIVSNFIDSVQKAFCLGGTMKQSVSDPNLLKTTTKTHMISPSRSSKLIVRIRKKSSARSFNNNIQEQEQEVTDHDMFSPNSNSPYYKGLTDQSLAILDDAASSSPSPPPYSPFYSPYYKGLTDYTLAIPSPNSPTHHNNIINPLPNSNTHESSPYYRGLIDYSLALHGSSSTHSSPPNMFHAHAHADISFIIEHDPLMEKVESAAAIQVDDKTVLELVPEEDASLEIEQEKPLRESSGSDQESKIEEAISEEIIMMDLITDDDVIQEEKPLRERVSEAADDEVEKIVSDNENNNAEKIILEDDGLVIEKKKPLRLRERVSEASNAYEEGNEYQYTWATKHQPVTLEDFICNRDTALNLKALIKGGCGCNHFIFEGPSNAGKRSMIRAMLREVFGADRVQVTEEVKEFNIKGEMVDNLKVRIKKSLSHIELNLSETKGYEKHVVDDLFKETYGSKTINNSLPCRPENCQAIILYEAEKLSIETLLYIKWLLEKYKGCSKVFFCCSDQSKLQHVKSLCTTVRLSSPTSEEIVKILEHIGEEEGIKLSREFVKRLILRSKNNLRQSIRALEATCRNKDILKDDDLILTGWEDDILNIAKNIIEEQSPRQLYVIRRKLQSLMIHDVPPDFIYKSLVAELTNLVDDSLRPGVAKLDKEYSKGCEIMFESVKQLGDGENKYQVTKKNAINYLKVEEFIAKFMSCYMNCVKKLSMA* 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2398 719 Gene3D - 535 595 - -
Lja1g2398 719 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 343 591 IPR027417 -
Lja1g2398 719 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 110 714 - -
Lja1g2398 719 Gene3D - 344 534 IPR027417 -
Lja1g2398 719 Gene3D - 596 709 - -
Lja1g2398 719 PANTHER OS10G0574500 PROTEIN 110 714 - -
Lja1g2398 719 SUPERFAMILY post-AAA+ oligomerization domain-like 596 665 IPR008921 GO:0003677|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2398 Lja-Chr1 27731321 27735321 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2398 346 711 Core DNA Replication Machinery Family AT5G27740 29.459 5.19e-51 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2398 K10756 - gmx:102664389 656.751