Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2396 ATGGTGGTTGGTGTTGGGAGCCAAGGTTTTCGTCCTCCTTCAATTTCGAACCTCAACCACTCTAGACAACTTCACTCTTTCTATGTCTCCGCCACCAATCGCCAACACAATCCACCCACAACCACCGACGACAACAATCTTAAACAACCTTCTTCCAGTTTCGGAAGACTCAAAGCTCACCAAGTCAAAGCTCTCATCCACCGAACCAAGCCCCAAAGACGCGACAGTGGAGCCAAGTACCAAAGACGCAGCACCACTCGCCAACCATTCACAGATTCTACTGTTGCAACAGAAAGAGAAGAAGCTCATCAAACCTCTCGTCATTCAGGTGGAGCCAAGTATCAAAGACGCAGTAGCACTCATCAACCATTCACAGATTCCACTGTTGAAAATAGAGAAAGAGAAGAAGCTCATCAAACCTCTCGTCATTCAGGTGGAAGACGACCTTCTTCTTCTTCATCTTCTTCTTCTCATTCGAAATTAGGAAGAGGATGGGGTGATACAATTACTGTTCCTTATTCGCCAATGGATAACAGAAAGCCATCAATGCCAGACAACAACTTTTTCAGTGTCAAATCCTTCAAGGATATAGGCTGCTCTGACAATGTCATTCAATCCCTCCAGAACCAGTCTTTTACTCGCCCTTCCCATGTACAGGCGATGGCATTTGGTCCTGTTATTGCTGGAAAGACTTGTGTCATATCTGATCAAAGCGGTTCTGGAAAGACATTAGCTTATCTTGCACCCATAATTCAGCGTCTTAAACAAGAAGAACTCGAAGGACGTAGTAAATCCTCTTCACAAGCTCCTAGAGTGGTTATACTGGCACCCACTGCTGAGTTAGCTTCTCAGGTCTTAGATAATTGTCGATCGATGTCAAAGTCTGGGGTTCCATTCAAATCTATGGTTGTCACTGGTGGCTTTCGACAAAGAACACAACTGGAAAGTTTACAGCAGGGTGTTGATGTCTTAATAGCTACACCTGGTCGATTTTTGTTCCTGATAAAGGAAGGCTTCTTGCAGTTGACAAATCTAAGATGTGCTGTGTTGGATGAGGTAGATATACTCTTGGGTGATGAGGACTTTGAAGGGGCTCTTCAATGCTTGATTAATTCTTCACTGGTTGACACACAATACTTATTTGTGACTGCTACTTTACCGAAAAATGTCTACAGCAGACTGGTTGAAGTTTTTCCTGATTGCGAAATGATCATGGGACCTGGTATGCACCGTATAAGTTCTCGCCTTGAAGAGGTTCTAGTAGATTGCAGTGGAGAAGATGGGCAAGAAAAAACTCCTGATACAGCATTTTTGAACAAGAAAGCTGCTCTTCTGCAGCTTGTGGAGGAAAGTCCTGTCCCAAGAACAATTGTGTTCTGCAACAGGATTGAAACATGTAGAAAAGTTGAAAATGCGTTAAACCGTATTGACAAAAAAGGAACTCGCATCCAAGTTCTACCTTTCCATGCCGCCATGACACAAGAATCACGGCTTGCTAGTAGGGAAGGGTTTACACGTTCTCCATCAAAAGAAGTCTCCCAGTTTATGGTTTGCACTGACAGAGCATCACGGGGAATTGACTTCGCGGAAGTGAATCATGTCATACTTTTTGACTTCCCACGTGATCCGAGTGAATATGTGCGGCGTGTTGGAAGAACAGCCAGAGGTGCTAGGGGACAGGGCAAGGCATTTATCTTTGTGGTTGGCAAGCAAGTATCCCTTGCACGCAAAATAATGGAAAGAAATCGGAAGGGTCACCCCCTACATGATGTACCTTCGGCTTTTGAGCTGATGAGATAG 1800 0.4444 MVVGVGSQGFRPPSISNLNHSRQLHSFYVSATNRQHNPPTTTDDNNLKQPSSSFGRLKAHQVKALIHRTKPQRRDSGAKYQRRSTTRQPFTDSTVATEREEAHQTSRHSGGAKYQRRSSTHQPFTDSTVENREREEAHQTSRHSGGRRPSSSSSSSSHSKLGRGWGDTITVPYSPMDNRKPSMPDNNFFSVKSFKDIGCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTLAYLAPIIQRLKQEELEGRSKSSSQAPRVVILAPTAELASQVLDNCRSMSKSGVPFKSMVVTGGFRQRTQLESLQQGVDVLIATPGRFLFLIKEGFLQLTNLRCAVLDEVDILLGDEDFEGALQCLINSSLVDTQYLFVTATLPKNVYSRLVEVFPDCEMIMGPGMHRISSRLEEVLVDCSGEDGQEKTPDTAFLNKKAALLQLVEESPVPRTIVFCNRIETCRKVENALNRIDKKGTRIQVLPFHAAMTQESRLASREGFTRSPSKEVSQFMVCTDRASRGIDFAEVNHVILFDFPRDPSEYVRRVGRTARGARGQGKAFIFVVGKQVSLARKIMERNRKGHPLHDVPSAFELMR* 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2396 599 MobiDBLite consensus disorder prediction 33 180 - -
Lja1g2396 599 MobiDBLite consensus disorder prediction 144 163 - -
Lja1g2396 599 CDD DEADc 203 390 - -
Lja1g2396 599 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 226 568 IPR027417 -
Lja1g2396 599 Pfam Helicase conserved C-terminal domain 440 556 IPR001650 -
Lja1g2396 599 SMART ultradead3 211 419 IPR014001 -
Lja1g2396 599 MobiDBLite consensus disorder prediction 127 143 - -
Lja1g2396 599 MobiDBLite consensus disorder prediction 33 56 - -
Lja1g2396 599 CDD SF2_C_DEAD 416 567 - -
Lja1g2396 599 Pfam DEAD/DEAH box helicase 217 390 IPR011545 GO:0003676|GO:0005524
Lja1g2396 599 SMART helicmild6 467 557 IPR001650 -
Lja1g2396 599 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 42 597 - -
Lja1g2396 599 Gene3D - 431 595 IPR027417 -
Lja1g2396 599 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 439 599 IPR001650 -
Lja1g2396 599 Gene3D - 176 404 IPR027417 -
Lja1g2396 599 MobiDBLite consensus disorder prediction 108 126 - -
Lja1g2396 599 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 192 220 IPR014014 GO:0003724
Lja1g2396 599 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 223 404 IPR014001 -
Lja1g2396 599 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 42 597 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2396 Lja-Chr1 27675171 27680958 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2396 191 578 Eukaryotic Initiation Factors Gene Family AT3G19760 26.289 1.60e-28 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2396 K13179 - gmx:100784377 699.123