Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2391 ATGGTTTTCGTCAAGTCTCAGAAATCAAGGGCTTACTTCAAGAGATTTCAAGTCAAGTTCAAGAGAAGAAGAGAGGGAAAAACCGATTACCGAGCCAGGATTCGGTTGATTAATCAGGACAAAAATAAGTATAACACACCGAAATACCGATTTGTTGTTCGATTTACAAACAAGGATATCACTGCTCAAATCATATCTGCTAGCATTGCTGGTGATATTGTTCTTGCCTCAGCATATGCACATGAACTGCCACACTATGGTTTGGAAGTAGGCCTTACAAACTATGCTGCAGCCTATTGCACTGGACTCCTGTTGGCCCGTCGAGTTCTTAAAAAGCTTGAAATGGATGAGGAGTACGAGGGCAATGTAGAGGCTACTGGAGAGGATTATTCAGTTGAACCTGCTGAGACCAGGAGGCCATTCCGTGCTCTCCTCGATGTTGGCCTTGTTAAGACCACAACAGGCAATCGTGTTTTTGGCGCGCTCAAGGGAGCCTTGGATGGGGGTCTGGATATTCCTCACAGTGATAAAAGATTTGCTGGCTTTGAGAAGGAGAAGAAAGAGCTTGATCCTGAGGTTCACCGAAAATATATCTTTGGTGGACATGTTGCTGCCTATATGAAGACGTTGATAGAAGATGAACCTGAAAAATACCAGTCACACTTCAGTGAATATATCAAGCGCGGGATAGAGGCTGATGGACTTGAGGATCTATACAAAAAGGTCCATGCTGCTATTCGTGCAGATCCCACAATTAAGAAGGCTGAGAAGAAGCCACCCAAGAAATCTAAGAGGTACAATCTGAAGAAGCTCACCTATGAGGAGAGGAAGGCAAAGTTAATTGCACGATTGCAGGCTCTTAATTCAGCAGCGGGAGCTGATGAAGATGAGGAAGATGATGAGTGA 906 0.4426 MVFVKSQKSRAYFKRFQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPHYGLEVGLTNYAAAYCTGLLLARRVLKKLEMDEEYEGNVEATGEDYSVEPAETRRPFRALLDVGLVKTTTGNRVFGALKGALDGGLDIPHSDKRFAGFEKEKKELDPEVHRKYIFGGHVAAYMKTLIEDEPEKYQSHFSEYIKRGIEADGLEDLYKKVHAAIRADPTIKKAEKKPPKKSKRYNLKKLTYEERKAKLIARLQALNSAAGADEDEEDDE* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2391 301 Coils Coil 270 290 - -
Lja1g2391 301 Hamap 50S ribosomal protein L18 [rplR]. 14 246 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lja1g2391 301 Pfam Ribosomal L18 C-terminal region 235 288 IPR025607 -
Lja1g2391 301 PANTHER - 1 301 - -
Lja1g2391 301 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 14 175 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lja1g2391 301 PANTHER RIBOSOMAL PROTEIN L5-RELATED 1 301 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lja1g2391 301 Gene3D - 1 291 - -
Lja1g2391 301 CDD Ribosomal_L18_L5e 41 170 - -
Lja1g2391 301 SUPERFAMILY Translational machinery components 11 252 - -
Lja1g2391 301 PRINTS Ribosomal protein L5 signature 20 39 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lja1g2391 301 PRINTS Ribosomal protein L5 signature 43 62 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lja1g2391 301 PRINTS Ribosomal protein L5 signature 84 104 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lja1g2391 301 PRINTS Ribosomal protein L5 signature 144 163 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lja1g2391 301 PRINTS Ribosomal protein L5 signature 164 183 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lja1g2391 301 PRINTS Ribosomal protein L5 signature 206 226 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2391 Lja-Chr1 27606225 27608537 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2391 1 292 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 81.849 0.0 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2391 K02932 - gmx:100805868 502.286