Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2389 ATGTCGAAGGACTATGTGGACCCACCACCAGCACCTCTCATCGACCTTGCTGAGATCAAGCTCTGGTCCTTCTACAGAGCCCTCATTGCCGAGTTCATCGCCACCCTCCTCTTCCTCTACGTCACCGTCGCCACCGTCATCGGCCACAAGAAGCAAACCGGACCATGCGACGGTGTCGGCCTCCTCGGCATTGCCTGGTCCTTCGGCGGCATGATCTTCGTCCTCGTCTACTGCACCGCCGGCATCTCCGGCGGCCACATCAACCCCGCCGTCACCTTCGGCCTCTTCCTCGCTCGCAAGGTGTCTCTCATTCGAGCTGTCTTGTACATGGTAGCTCAGTGCTTGGGTGCTATCTGCGGTGTTGGGTTGGTGAAGGCGTTCATGAAGCACCCCTACAACTCCCTCGGCGGCGGTGCTAACTCCGTGGCTCATGGCTACAGCAAGGGCTCTGCTCTCGGTGCTGAGATTATCGGCACGTTTGTGCTTGTGTACACTGTGTTCTCTGCGACTGACCCGAAGAGAAGCGCGCGTGACTCTCACGTGCCAGTACTGGCACCGTTGCCTATTGGTTTCGCTGTTTTCATGGTTCACCTGGCCACCATACCCATCACTGGTACCGGCATTAACCCTGCAAGGAGCTTCGGTGCTGCTGTTATCTTCAACAATGGCAAAGTTTGGGATGACCAGTGGATATTCTGGGTTGGGCCATTCGTAGGAGCATTGGCAGCAGCAGCATATCACCAGTACATACTGAGAGCAGCGGCTATCAAGGCACTGGGCTCGTTCCGTAGCAACCCCACCAACTGA 807 0.57 MSKDYVDPPPAPLIDLAEIKLWSFYRALIAEFIATLLFLYVTVATVIGHKKQTGPCDGVGLLGIAWSFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYMVAQCLGAICGVGLVKAFMKHPYNSLGGGANSVAHGYSKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNNGKVWDDQWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSNPTN* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2389 268 Pfam Major intrinsic protein 19 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g2389 268 ProSitePatterns MIP family signature. 86 94 IPR022357 -
Lja1g2389 268 CDD MIP 26 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g2389 268 TIGRFAM MIP: MIP family channel proteins 30 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g2389 268 PANTHER AQUAPORIN PIP-TYPE-RELATED 2 268 - -
Lja1g2389 268 PRINTS Major intrinsic protein family signature 68 92 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g2389 268 PRINTS Major intrinsic protein family signature 230 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g2389 268 PRINTS Major intrinsic protein family signature 26 45 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g2389 268 PRINTS Major intrinsic protein family signature 154 172 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g2389 268 PRINTS Major intrinsic protein family signature 190 212 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g2389 268 PRINTS Major intrinsic protein family signature 105 124 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g2389 268 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 2 268 IPR034294 -
Lja1g2389 268 SUPERFAMILY Aquaporin-like 18 252 IPR023271 -
Lja1g2389 268 Gene3D Glycerol uptake facilitator protein. 11 268 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2389 Lja-Chr1 27594785 27595953 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2389 3 268 Major Intrinsic Protein MIP AT4G35100 91.353 0.0 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2389 K09872 - gmx:100306103 523.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2389 1 27594785 27595953 Lja1g2389 1 27594785 27595953 ECH