Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2374 ATGGGAAGGTCCCCTTGCTGTGAGAAAGCTCACACAAACAAAGGAGCATGGACAAAAGAAGAGGATGATCGCCTCATCGCTTACATTCGAGCTCACGGCGAGGGCTGCTGGCGTTCTCTTCCCAAATCCGCCGGTCTTCTCCGCTGCGGCAAGAGCTGCCGTCTCCGATGGATCAACTACCTCCGCCCTGACCTCAAACGTGGCAATTTCACCCCTCAAGAAGATGAACTCATCATCAAACTCCACAGTCTCCTGGGCAACAAATGGTCTTTAATTGCTGGAAGATTGGCTGGAAGAACAGACAATGAGATAAAGAATTACTGGAACACTCATATAAGAAGGAAGCTTTTGAGCAGAGGAATTGACCCTGCTACTCACAGGCCTCTTAATCAAGAACAATCTGAATTAGCACCAGCTGCCACCACAACCACTATTTCTTTCAAACAAGATGAAGATCATGAAGATAACAAGACCGTGTTTGGGGAGATTAATAAGGATTCAAAGGGAGGATCCATCTCCATAGAACGCTGCCCTGACCTCAACCTTGAGCTAACCATTAGTCCACCCCATCAGCCAATGATAAAGAAAAGCAGCAGCCTCTGCTTTGACTGTAGTTTGGGACTGCAGAATAGCAAGGACTGCACCTGTGAGATTAATACCGCTGCTGGTTATGATTTCATGGATTTGAAAACCAGTGTTCTTGATTACAGAAGCTAG 717 0.4672 MGRSPCCEKAHTNKGAWTKEEDDRLIAYIRAHGEGCWRSLPKSAGLLRCGKSCRLRWINYLRPDLKRGNFTPQEDELIIKLHSLLGNKWSLIAGRLAGRTDNEIKNYWNTHIRRKLLSRGIDPATHRPLNQEQSELAPAATTTTISFKQDEDHEDNKTVFGEINKDSKGGSISIERCPDLNLELTISPPHQPMIKKSSSLCFDCSLGLQNSKDCTCEINTAAGYDFMDLKTSVLDYRS* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2374 238 PANTHER TRANSCRIPTION REPRESSOR MYB4 1 221 - -
Lja1g2374 238 CDD SANT 69 112 IPR001005 -
Lja1g2374 238 CDD SANT 16 61 IPR001005 -
Lja1g2374 238 Gene3D - 14 66 - -
Lja1g2374 238 Gene3D - 69 140 - -
Lja1g2374 238 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 221 - -
Lja1g2374 238 SMART sant 13 63 IPR001005 -
Lja1g2374 238 SMART sant 66 114 IPR001005 -
Lja1g2374 238 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lja1g2374 238 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lja1g2374 238 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lja1g2374 238 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lja1g2374 238 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Lja1g2374 238 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lja1g2374 238 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2374 Lja-Chr1 27421879 27423153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2374 1 238 MYB Transcription Factor Family AT4G38620 56.940 2.38e-100 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja1g2374 Myb_DNA-binding 2.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2374 K09422 - jre:109006592 365.925
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2374 1 27421879 27423153 Lja1g2374 1 27421879 27423153 ECH