Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2369 ATGGACGGCGATACTGGACGCTGGGCGTTGGAGTTCTTCATCGGAAAGCGAATCATAAACAACACCCTAATCCAAGAAATCATTCGCACAATCAAGGTTCCTCCCAACCCTAATTCCTACTTCATCAAGTCCCTTCTCCTCAGAATCCTTCAAGAGAGGCTGCAGATTGAGTCAATCGATGAATCCATGCTCGAAATCATGGAGATCCTCGAAGAAGTTCTTCGATCCGAGGGCTCTCCCGTCAGTGCCTCCTTTACCGCCGCCTATTGTGCGGTGGCGGTGGAATGCACCCTCAAGTACATCAAACTGGAAGGATCTATTCCTCGTTACTTTGATTCTGTCAAGACAATATGGTGGAAAAGGGTTATGAACATGAAACCCTCGCCTGGTGGTGAAAAACGAAGCCTCTTGTTCTCCGACGAGTTGGATAGGTGGAGAATTGACATTGAGGCTTCACTGAATGATCCTTGTGTAAGGGATCGGTTGGCAGCCACCGAGAACACCAGAAGCGTCGCCATTAACCGGCTCAAGGTTTTTTTCGCAGAGTTGTGGGAAGGCGTGGACCCTTCTTTTCTTGAGCTCGCTGTGGAGAATGCGGCAACGGATGCTGCTGAAGAGCAACAGAGAGAAACTCAAGAGGGTAATCTTCTGCTTGACGACATCTGCATTACTAATGTTGTTGAGGAAATGGATCCGTCAACAACTTGTCAGAGCGATGTTCCACCAACAACTACAAATGCTCATGCTCATGAGCTATTGATAGATGACTTACAGGGGGAGACATCAAATCGTCCTCAGTTGCCTAGCCCTAAGAGGAAGAGAGTTTCTCCTTTAAAGAAGTATGAACCAAGAAATGTTATAAAAAGGAGAACAACAAGAAAATGGAGTCAATTGGAAGAAGAAACTCTAGAGAAAGCAGTAAATAAATTTGGCATAGGAAACTGGAAATTAATGTTAAATGCTCACAAAGATGTATTTGAAAGGAGAACTGATGGTGATTTGAAGGACAAGTGGAGAAACATGAGGCGGTGTAGAAGCAAATAA 1044 0.4511 MDGDTGRWALEFFIGKRIINNTLIQEIIRTIKVPPNPNSYFIKSLLLRILQERLQIESIDESMLEIMEILEEVLRSEGSPVSASFTAAYCAVAVECTLKYIKLEGSIPRYFDSVKTIWWKRVMNMKPSPGGEKRSLLFSDELDRWRIDIEASLNDPCVRDRLAATENTRSVAINRLKVFFAELWEGVDPSFLELAVENAATDAAEEQQRETQEGNLLLDDICITNVVEEMDPSTTCQSDVPPTTTNAHAHELLIDDLQGETSNRPQLPSPKRKRVSPLKKYEPRNVIKRRTTRKWSQLEEETLEKAVNKFGIGNWKLMLNAHKDVFERRTDGDLKDKWRNMRRCRSK* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2369 347 CDD SANT_TRF 293 343 - -
Lja1g2369 347 Gene3D - 295 347 - -
Lja1g2369 347 SMART sant 291 344 IPR001005 -
Lja1g2369 347 Pfam Myb-like DNA-binding domain 293 341 IPR001005 -
Lja1g2369 347 SUPERFAMILY Homeodomain-like 293 344 IPR009057 -
Lja1g2369 347 ProSiteProfiles Myb-like domain profile. 294 342 IPR001005 -
Lja1g2369 347 MobiDBLite consensus disorder prediction 256 277 - -
Lja1g2369 347 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 287 346 IPR017930 -
Lja1g2369 347 PANTHER MYB TRANSCRIPTION FACTOR 245 343 - -
Lja1g2369 347 PANTHER MYB TRANSCRIPTION FACTOR 1 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2369 Lja-Chr1 27379819 27382037 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2369 7 341 Single Myb Histone (SMH) Gene Family AT1G15720 26.546 2.18e-22 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lja1g2369 Myb_DNA-binding 1.8e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2369 - K11111 lja:Lj1g3v3343860.1 657.136