Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2363 ATGGTGCTGATTGTTCATCATGTATATCCTCAAGCACTGAAGTTCATAATATTAGTTACCCTGCTCACTTTATCAGATTGCTATGACCCGTTGGATCCAACTGGGAACATTTCAGTAACCTTTGACATTTACCAACGTACAGAAAATGGATATCTGGCAAAGGTGATTCTTCAAAACAATTATCTATATCGCCATGTAGATAAACCTGGCTGGAAACTAGGATGGACATGGGCTAATAGTGAAGTGATCTGGTCAATGAGTGGTGCCATTGCAACTGATAGAGGGAGCTGCGCAAATTACAGAGGCTCTCAGATGCCGCATTCATGCAAGAAAGATCCCATCATTGTTGATCTCGGTTCAGATGTATCGCAAAACCGGTCAGAGCATTGCTGTGGTGGTGGCATCCTCTCTGCTTTGGTTGTGGATCCTTTGAATTCTTTCACTTCATTTGAACTTGAAGTAAGAAACTTGGGGAACAACCCACTTGGACAAGCACCTAATAATGTTACATTAATGGCCCCTGGTCCTGGTTACTCTTGTAGCCCATTTCATGATACAGAACCCTCAGTATCCTTGGATTCTGGGGGACTAAGACAAGTTCCTGTTCTCAGAACTTGGAAGTCAACATGTGCATACTCCAGTTTCTTAGCAAACCCATCACCAATGTGCTGTGTTTCCTTCTCAACATTTTACAATCCTATAGTCACATCATGCAACAATTGCAGTTGTGGATGCAAAGAAGCAGATAAAAGCACAAAGTCTTGCATAAGGCCTGGTGATCTCTTACCAAGTTCAAATGAGGAAAATATAATGAAGTGCACAGATCATATGTGCCCCATTCGAGTTCATTGGCATTTCAAAAACAACTATATGGATCAGTGGAGGGTGAAGCTTACAATTTCTAACTACCACTTTAAGAGAAAGTACTCAAATTGGAATGTACTGGTTCAGCATCCTGGTTTAAGCCAAAAAGCAACAACTTACAGCTTCAACAGCACTAAACTTCCGACAGCGGGGCTCCAAGATGGAGTTGCCCTTTTTTGGGGGATAGATTTTTACAACAATGAGCTATCGCACTCTGATAAGGATCAAGTGGGGTTTGTGACAACAGAAATACTATTGGAAAAAGATCCAAACTCTTTCACATTACATAACGGATGGGCATTCCCTAGAAGAATATACTTCAACGGTGACAACTGTGAAATGCCATTACCTGACACATTCCCCATGTTACCAAACGGCAGCTCCAGTTTAAGACATGCTGCTAACTACGGTTCTAATCTTCTATTGATTTCTTTGTTTTTTGTTCTAGTGTTCCTTCGGTTTTGA 1329 0.4131 MVLIVHHVYPQALKFIILVTLLTLSDCYDPLDPTGNISVTFDIYQRTENGYLAKVILQNNYLYRHVDKPGWKLGWTWANSEVIWSMSGAIATDRGSCANYRGSQMPHSCKKDPIIVDLGSDVSQNRSEHCCGGGILSALVVDPLNSFTSFELEVRNLGNNPLGQAPNNVTLMAPGPGYSCSPFHDTEPSVSLDSGGLRQVPVLRTWKSTCAYSSFLANPSPMCCVSFSTFYNPIVTSCNNCSCGCKEADKSTKSCIRPGDLLPSSNEENIMKCTDHMCPIRVHWHFKNNYMDQWRVKLTISNYHFKRKYSNWNVLVQHPGLSQKATTYSFNSTKLPTAGLQDGVALFWGIDFYNNELSHSDKDQVGFVTTEILLEKDPNSFTLHNGWAFPRRIYFNGDNCEMPLPDTFPMLPNGSSSLRHAANYGSNLLLISLFFVLVFLRF* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2363 442 PANTHER PROTEIN COBRA 12 431 IPR006918 GO:0010215|GO:0031225
Lja1g2363 442 Pfam COBRA-like protein 51 213 IPR006918 GO:0010215|GO:0031225
Lja1g2363 442 PANTHER COBRA-LIKE PROTEIN 12 431 - -
Lja1g2363 442 PIRSF COBRA 1 441 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2363 Lja-Chr1 27338968 27341592 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2363 26 440 COBRA Gene Family AT3G29810 44.917 3.45e-130 381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2363 - - vra:106760500 699.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2363 1 27338968 27341592 Lja1g2363 1 27338968 27341592 ECH