Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2360 ATGGGTGTTCGATTGCAATTCGTGGTTGTTCATGCAAACAGGATGTTCAAGTCACAAAATTTATTCCGGAGTAGAAATCAGTATCAATCGAATAATAATGTTCCAAAGGGGCATGTAGCAGTGTATGTTGGAGAGACGATTCAAAAGAAGACGCGATTTGTGGTGCCAATATCATATTTGAACCATCCTTCATTTATGGACATGCTAAACAGAGCTGAGGAAGAGTTTGGGTTCAATCATCCAATGGGTGGTCTCACTATCCCTTGCAAAGAAGAAGCTTTCATCAATCTTACCTCTCAATTGCGTGCCTCCTGA 315 0.4095 MGVRLQFVVVHANRMFKSQNLFRSRNQYQSNNNVPKGHVAVYVGETIQKKTRFVVPISYLNHPSFMDMLNRAEEEFGFNHPMGGLTIPCKEEAFINLTSQLRAS* 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2360 104 Pfam Auxin responsive protein 19 99 IPR003676 GO:0009733
Lja1g2360 104 PANTHER AUXIN-RESPONSIVE PROTEIN SAUR21-LIKE 1 103 - -
Lja1g2360 104 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 1 103 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2360 Lja-Chr1 27318041 27318355 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2360 33 94 Calmodulin-binding Proteins AT3G43120 50.000 2.19e-16 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2360 K14488 - cam:101504274 153.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2360 1 27318041 27318355 Lja1g2360 1 27318041 27318355 ECH