Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2356 ATGGCAATTCAAAGGAAATCAAGCAATAAGCTTCATCTGAAGCAAATCCTGAAGAGGTGTTCAAGCTTAGGCAAGAAAAACGGTGGCTATGTCGACGACTATGGTCTCCCTCTTGATGTCCCAAAAGGCCATTTTGCTGTTTACGTTGGGCAGAAAAGAAGCAGATACATTGTCCCAATCTCCTTATTGTCTCATCCGCAGTTCCAATCCCTTCTCCGACAAGCTGAAGAAGAATTCGGCTTCGATCACGATATGGGTCTCACTATTCCTTGTGAAGAAGTTGTTTTCCGCTCCCTCACTTCATCAATGCTCAGATGA 318 0.4434 MAIQRKSSNKLHLKQILKRCSSLGKKNGGYVDDYGLPLDVPKGHFAVYVGQKRSRYIVPISLLSHPQFQSLLRQAEEEFGFDHDMGLTIPCEEVVFRSLTSSMLR* 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2356 105 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 6 105 IPR003676 GO:0009733
Lja1g2356 105 PANTHER AUXIN-INDUCED PROTEIN 15A-LIKE 6 105 - -
Lja1g2356 105 Pfam Auxin responsive protein 35 102 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2356 Lja-Chr1 27265807 27266480 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2356 37 99 Calmodulin-binding Proteins AT3G43120 57.143 5.78e-21 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2356 K14488 - psom:113288826 166.777
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2356 1 27265807 27266480 Lja1g2356 1 27265807 27266480 ECH
Lja1g2356 1 27265807 27266480 Lja2g0545 2 4903693 4904007 ECH
Lja1g2356 1 27265807 27266480 Lja4g3144 4 59485648 59485968 ECH