Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2355 ATGTCACCGGCAACCGGAAGTAGCAGCAAGATCCGGCACATTGTGCAAGTCCGTCAAATGCTACAGCGGTGGCGCAAGAAATCATGCGTGAAGGCGCCGCTGGATGTTCCGGCGGGGCACGTGGCGGTGTGTGTGGGCCCGAGCAGCACGAGGTTCGTGGTGCGCGCGAAGTACCTGAACCACCCAATCTTCGAGAAGCTTCTGGTGCAAGCGGAGGAGGAGTACGGGTTTTGCAACCAAGGCCTGTTGACGATCCCGTGCGATGAGTCGCTCTTTCAAGAGATCCTGCGTGTTATGTCCCGATCCGAGTCAACTCGGTTCTCTACCTTTGAAGGTTTACGGAAACGCTGCCACGTGGATGTCTTGAGTTTTCTTGATGTGGTCGGAGAATCTAGACCCTTGCTTCATGATCACCCTGTTTGCTGA 426 0.5563 MSPATGSSSKIRHIVQVRQMLQRWRKKSCVKAPLDVPAGHVAVCVGPSSTRFVVRAKYLNHPIFEKLLVQAEEEYGFCNQGLLTIPCDESLFQEILRVMSRSESTRFSTFEGLRKRCHVDVLSFLDVVGESRPLLHDHPVC* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2355 141 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 6 137 IPR003676 GO:0009733
Lja1g2355 141 PANTHER SMALL AUXIN-UP RNA-RELATED 6 137 - -
Lja1g2355 141 Pfam Auxin responsive protein 19 98 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2355 Lja-Chr1 27254542 27255250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2355 6 135 Calmodulin-binding Proteins AT4G34750 51.049 3.42e-40 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2355 K14488 - jre:108986945 195.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2355 1 27254542 27255250 Lja1g2355 1 27254542 27255250 ECH