Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2352 ATGGAAGGCTCTGTTTCTGAACGTCTTGATTTTGGGAAGATGGAACATGGGTGCAAGCATTACAGGAGAAGATGCAGGATTCGTGCTCCCTGCTGCAACGAGATCTACTCCTGCCGCCATTGTCACAACGAGGCAACGAGCATGTTGAAGAATCACTCTGATAGGCACGAACTGGTTCGCCAAGATGTTAAACAAGTTGTTTGTTCTGTTTGTGACACTGAACAGCCAGCTGCTCAAGTTTGCACAAATTGTGGTGTCAAAATGGGAGAATATTTCTGCGACATCTGCGTATTCTTCGATGATGATGCAGAGAAACAACAGTTTCATTGTGATGATTGTGGGATCTGCAGGGTTGGTGGGCGAGAAAATTTTTTCCACTGCAAGAAATGCGGGTCTTGCTACTCAGTTGGTCTACGTGATAATCATATATGTGTGGAGAACTCCATGAGGCATCACTGTCCTATTTGTTATGAGTACCTTTTTGATTCACTGAAAGACACTGCTGTTATGAAATGTGGTCACACGATGCACTCTGAATGCTACCATGAAATGATAAAACGTGACAATTACTGTTGTCCCATATGCTCCAAGTCAATAGCTGACATGTCTATGATGTGGAAGAGGACTGATGAAGAGATTGAGGCAACTGTCATGCCTGAAGTTTATCGGTACAGAAAGGTCTGGATACTATGTAATGACTGCAACAACACAACCGAAGTTTACTTCCATATTCTTGGGCAAAAATGCGGTCACTGCAGATCATATAACACTCGTGCAATTTCACCTCCAATTTGCCCTCAATGA 804 0.4328 MEGSVSERLDFGKMEHGCKHYRRRCRIRAPCCNEIYSCRHCHNEATSMLKNHSDRHELVRQDVKQVVCSVCDTEQPAAQVCTNCGVKMGEYFCDICVFFDDDAEKQQFHCDDCGICRVGGRENFFHCKKCGSCYSVGLRDNHICVENSMRHHCPICYEYLFDSLKDTAVMKCGHTMHSECYHEMIKRDNYCCPICSKSIADMSMMWKRTDEEIEATVMPEVYRYRKVWILCNDCNNTTEVYFHILGQKCGHCRSYNTRAISPPICPQ* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2352 267 ProSiteProfiles Zinc finger CHY-type profile. 11 86 IPR008913 GO:0008270
Lja1g2352 267 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MIEL1-LIKE ISOFORM X1 1 266 - -
Lja1g2352 267 Pfam Ring finger domain 152 195 IPR001841 -
Lja1g2352 267 SUPERFAMILY CHY zinc finger-like 15 87 IPR037274 GO:0008270
Lja1g2352 267 Pfam Zinc-ribbon 201 258 IPR039512 -
Lja1g2352 267 SUPERFAMILY Zinc hairpin stack 89 146 IPR037275 -
Lja1g2352 267 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 1 266 - -
Lja1g2352 267 SUPERFAMILY RING/U-box 152 204 - -
Lja1g2352 267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 226 IPR013083 -
Lja1g2352 267 SMART ring_2 153 195 IPR001841 -
Lja1g2352 267 Pfam CHY zinc finger 18 98 IPR008913 GO:0008270
Lja1g2352 267 ProSiteProfiles Zinc finger CTCHY-type profile. 88 152 IPR017921 -
Lja1g2352 267 Gene3D - 227 262 - -
Lja1g2352 267 ProSiteProfiles Zinc finger RING-type profile. 153 196 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2352 Lja-Chr1 27242399 27245643 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2352 10 266 C2H2 Transcription Factor Family AT3G18290 39.313 8.03e-54 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2352 K10144 - gmx:100792038 534.258