LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja1g2348	ATGGAGAACGACCATGTCGAGTCTCCGGAAACAGGCTCGGCACCGGTTCAGCGAACCACAGAGGAACTCATCGCAAGGGCCATAGCTCCTGTCAAGAAGGACTTCCTCTGTCCTCCTCCGGTTCGAGTTCCTCCGCCTCCTTCAGACGCCGGCGGCGACGACAAGGCCCCTCCTGTCATCAAGGAGAAGAAGTCTAAGCGCCAGTTCAAACGCGAACGTCTTCAGGAACAGAAGTCAGCACAAAACCTGTGTTCGCAAATTGCCAAGACAGGTGATGTTACTTCATGTCCGTTCAAAGACAAGTGTCGCTTCAGCCATGATTTGGAGGCATTCAAAGCACAGAAACCACCTGATCTTGAGGGAGAATGTCCTTTCGTTAAAGCTGAAGGCTCTTGCCCTTATGGGCTAGGCTGTAGATTTTCAGGTACGCATCAACAGGGTATGCCCTCTGCTAATTTGAATGGTGACAGGAGGAAAAGTTCTGAGATGAATGGTTTTAGCAAAGATGTTCAAAAGCTTTTGTGGAAAAATAAGATGGCCTTCCCCAAAGCTGAGGCCAACCTCAAACGTCTTGGCCTCTTGGGACTCTCAAAGTCAAAGGGAAATGCCTTGCGAAATAAAGATAGTGGTGACACTAGTTCAAATAAATGTGTTCAATCTGACGACAATGGCTCTTGCGCGGTTACATCTGACTTGGGCTCCAAGTTAGAATGCTCTGCAGAAGTCGATAAAGATGGCGACTTTGATGGAAAACTTGAATCTGGTGTAATTTGTCCACAGAAGAGAAGAAAAACTGCAGAAGATGATGGTGCTGGGGAAATTGAAAATGAAGATGTCAGAGTTTCTGAGCAAGTTACTGAAAGCTGCATAAAATCTGAACCAGATGCAGGAAATGATGATATTACCCCAGAAACCGATCTAAGCCTTAAGTTACACTTGCGTGAAAAGAAGCTTATTGATTTCAGAGAGAAGTTGTATCTTGCACCCTTGACCACTGTTGGAAATCTCCCTTTCCGGAGGGTTTGCAAAGTATTGGGAGCTGATGTAACATGTGGTGAAATGGCAATGTGCACAAATCTTTTGCAGGGTCAAGCTTCAGAATGGGCATTGCTGAGACGTCATTCATCTGAAGATTTATTTGGTGTACAAATCTGTGGGGGATATCCAGAATCTGTGGCACACACAGTTGAACTAATAGAAAAGGAATGTACCGTAGACTTTATTGATGTGAATATGGGTTGCCCTATTGACATTGTTGTGAATAAGGGTGCTGGATCAGCTCTTCTTACAAAACCAATGCGGATTAAAAATATTGTAGAAGTAGCTTCAGGAACCGCAGATAAACCAATAACTGTGAAGGTGCGGACAGCTTATTATGAAGGGAAAAATCGCGTTGATTCTCTGATAGCAGACATTAGCTCTTGGGGGGCTAGTGCAGTGACAATACACAGTAGGTCACGTCAACAACGCTATAGCAAGCTTGCTGACTGGAACTACGTTTACCAGTGTGTCAGGAAGGCCCCTAATACTTTGCAAGTAGTGGGGAATGGAGATGTTTATTCATTTGAAGACTGGAATAATCACAGAACTGAATGCCCTGAACTTGCAACATGCATGATTGCGCGTGGTGCCCTGATTAAACCTTGGTTATTTACAGAGATCAAGGAACAGAGACATTGGGACATTAGTTCTGGTGAGAGACTAAATATTCTCAAAGATTTTGTGCATTTTGGCCTTGAACACTGGGGTTCTGACACAAAAGGTGTGGAGACAACCAGGCGGTTCTTGTTGGAATGGCTTAGCTACACTTGTAGGTATATACCTGTTGGTCTTTTGGATGTGATTCCGCAACGAATAAACTGGCGCCCACCATCTTACTTTGGGCGTGATGAGCTTGAAACAGTGATGGCCTCAGAGTCTGCAGCAGACTGGATAAGAATATCAGAGATGTTACTAGGCAAGGTTCCAGATGGCTTTACATTTGCACCAAAGCACAAATCAAATGCTTACGATAGAGCTGAAAATGGTTAA	2031	0.4461	MENDHVESPETGSAPVQRTTEELIARAIAPVKKDFLCPPPVRVPPPPSDAGGDDKAPPVIKEKKSKRQFKRERLQEQKSAQNLCSQIAKTGDVTSCPFKDKCRFSHDLEAFKAQKPPDLEGECPFVKAEGSCPYGLGCRFSGTHQQGMPSANLNGDRRKSSEMNGFSKDVQKLLWKNKMAFPKAEANLKRLGLLGLSKSKGNALRNKDSGDTSSNKCVQSDDNGSCAVTSDLGSKLECSAEVDKDGDFDGKLESGVICPQKRRKTAEDDGAGEIENEDVRVSEQVTESCIKSEPDAGNDDITPETDLSLKLHLREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGGYPESVAHTVELIEKECTVDFIDVNMGCPIDIVVNKGAGSALLTKPMRIKNIVEVASGTADKPITVKVRTAYYEGKNRVDSLIADISSWGASAVTIHSRSRQQRYSKLADWNYVYQCVRKAPNTLQVVGNGDVYSFEDWNNHRTECPELATCMIARGALIKPWLFTEIKEQRHWDISSGERLNILKDFVHFGLEHWGSDTKGVETTRRFLLEWLSYTCRYIPVGLLDVIPQRINWRPPSYFGRDELETVMASESAADWIRISEMLLGKVPDGFTFAPKHKSNAYDRAENG*	677

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja1g2348	676	MobiDBLite	consensus disorder prediction	200	223	-	-
	Lja1g2348	676	Gene3D	Aldolase class I	319	562	IPR013785	-
	Lja1g2348	676	MobiDBLite	consensus disorder prediction	35	80	-	-
	Lja1g2348	676	Pfam	Dihydrouridine synthase (Dus)	327	561	IPR035587	-
	Lja1g2348	676	CDD	DUS_like_FMN	324	559	IPR035587	-
	Lja1g2348	676	PANTHER	TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE	28	676	-	-
	Lja1g2348	676	Coils	Coil	60	80	-	-
	Lja1g2348	676	MobiDBLite	consensus disorder prediction	37	52	-	-
	Lja1g2348	676	MobiDBLite	consensus disorder prediction	202	223	-	-
	Lja1g2348	676	ProSiteProfiles	Zinc finger C3H1-type profile.	78	109	IPR000571	GO:0046872
	Lja1g2348	676	MobiDBLite	consensus disorder prediction	1	21	-	-
	Lja1g2348	676	PANTHER	TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE	28	676	-	-
	Lja1g2348	676	ProSitePatterns	Uncharacterized protein family UPF0034 signature.	408	426	IPR018517	GO:0008033\|GO:0017150\|GO:0050660
	Lja1g2348	676	Gene3D	-	73	152	-	-
	Lja1g2348	676	SUPERFAMILY	FMN-linked oxidoreductases	324	637	-	-
	Lja1g2348	676	MobiDBLite	consensus disorder prediction	55	77	-	-

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C3H	Lja1g2348		Dus	3e-48	CL0036

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja1g2348	K05544		-	gmx:100783494	1072.38

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja1g2348	1	27195370	27200103	Lja1g2348	1	27195370	27200103	ECH