Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2340 ATGGACGTTGAAGACGAAGAACCTTCCCCCAACGAATCTCCTCCTTCACTCCATCAACAACACTCCGATGAACCTCCACTCCTCTCCACCAATGCCGAGCCTGTGATCGCCGGAGAGAATAATGACGAGGAGACCGCGGTTGCTGCTGAAGTGGTTGCCGCCGATGCGATGATGGATGAGGCGGCTGCTGCTGTGTCCGGTGAGGGTGGTGAAATGCTAGTGGTGGACGCGGCGCGTGATGGCTCTCCGTTGGATGGGGCTGGCGTGGAGATGGAAGATGAAATTGAGGAGGATAAGGGGAATGAAGGAACCGATGTGGATGTGGATGATTCCATGGCTGTGGAGACTGGAAGGGTGGAAGAGGAAGCCAATTTGGCTATTGGGGAGGAGCAGGTCAGGGACGAGGAGGCTATTGAAGCTGCTTTGATGGTAGAAGAAGAAGAAGAACAGCTGGGAGGAGAAGGAGAAGAACAGCAACAAGGTGAAGAAGAAAAAGGAGATGAAGTAGAGCCACAACAAGGAGAAGAAGAACATCAACAAGAAGGAGAAGCAGAAGGAGACGAAGAAGAACAGCAACTCGGAGAAGAAGGAGAAGAAGAGGAACAACTAGAAGAAGATGGAGAAGAAGAAGAGCAGCAAGAAGGAGAAGAAGAAGAAGGAGACGAGGAAGAAGTACAAGAAGAAGAAGAAGAAGCTGGTGTTGATGGTGGTGCTGCAGAGGCTACAGAGTTCACCGAGGTCGAGGAGATTGATGCGATGGAGGAGCAGAGCGTGAGTGTTAGTGGTGGGAAGAGGAAGCGTGGGAGTGGGAAGAATCCTAAGTCTACAGGAAGAGTTTCATTGAAGAAAAAGATGGAAGAGGACGTTTGTTTCATTTGCTTCGATGGGGGCGAGCTTGTGCTTTGTGACCGGAGGGGATGCCCCAAGGCTTACCATCCTTCATGCATTAATCGTGATGAGGCCTTCTTTCGAGCCAAGGGAAAATGGAATTGTGGTTGGCATCTTTGCAGCATCTGTGAGAAGAATGCTTACTATATGTGCTATACATGTACATTCTCTTTGTGCAAGGGTTGTATCAAAGATGCTGCTATCCTATGTGTTAGGGGGAACAAGGGCTTTTGTGAGACATGCATGAGAACTGTAACGTTGATTGAACAGAATGAGCAGGGGAACAACATGGGACAAGTTGATTTTGATGACAAAAATAGCTGGGAGTATCTTTTCAAGGACTACTACATTGATCTAAAAGGAAAGCTTTCTTTAACTTATGATGAAGTCATTCAAGCTAAAAACCCTTGGAAGGGATCTGATATGCTCCTTTCTAAAGAGGAATCACGAGATGAACTTTTTGATGCCAGTAATGATAGAGGGTCCGATTCGGATAGCTCCTATGAGAAAGTAGATTTGAGTCGTTCTAAAAAAAGAAAGGCCAAGAAAAAGGCGAAGTCCCGTTCCAAAGAAGGTAGTTCATACAGTGCAGTAACAGTGCTTGGTGCTGACAGACCATCTGCAGATGAAAGCTTTGAGTGGGCTTCAAGGGAGCTTTTGGAGTTTGTTATGCACATGAGAGATGGAGATATATCTGTTCTGTCTCAGTTTGATGTACAGGCTCTTTTGCTAGAGTATATTAAAAGAAATAAGCTCAGAGATCCTCGCCGAAAAAGTCAAATCATTTGTGATGTAAGGCTTCAGAATTTGTTTGGTAAACCAAGAGTTGGACATTTTGAAATGTTAAAGCTTCTTGAATCCCATTTCCTTCTAAAAGAGGATTCTCAGGCTGAAGATCTACAGGGGAGTGTTGTTGATACAGAAGTTAGTCATTTGGAAGGTGATGGCAATGTAGATTCATATCTGAAATCTGGAAAAGAAAAGAAACGTAGAAGTCGTAAAAAGGGTGATGAGAGAGGACTTCATTCTAATATTGATGATTATGCAGCCATTGATAATCATAATATTAGTTTAATTTATCTAAGACGTAATTTGGTGGAAGATCTACTTGAAGATACAGAAAATTTTCAGGATAAAGCTGTTGGTTCTTTTGTGAGAATAAGAATTTCTGGTAGTGCTCAGAAGCAAGACTTGTATAGGCTGGTTCAGGTTGTAGGTACATGCAAAGCACCAGAGCCATATAAAGTTGGCAAAAGGATGACAGATATCATGCTAGAAATCTTAAATTTAAACAAGACAGAGATTGTATCTATCGATATTATCTCAAATCAGGAGTTCACAGAGGATGAATGCAAGCGTCTCCGTCAAAGCATAAAGTGCGGGCTCATAAGTCGGCTGACTGTGGGTGACATTCAGGATAAAGCATTGACACTTCAGGCAGTTAGAGTAAAAGATTGGCTAGAAACAGAGACAGTGCGATTAAGTCATCTTCGTGATAGAGCTAGTGAGAAAGGGCGCAGAAAAGAGCTCAGAGAATGTGTCGAGAAATTGCAGCTTCTGAAAACACCTGAAGAACGACAACGTAGATTGGAGGAAATTCCAGAAATACACGTGGATCCAAAAATGGATCCAAGTTATGAGTCTGAAGAAGATGAAGATGAAATGGAGGATAAAAGACAAGATAACTATATGAAACCTAGAGGGTCTGCATTTGGAAGGAGGGGGAGAGAAATTGCTTCTCCTAGAAGTGGTTCAAGTGATTCTTGGAGTGGAACGAGGAGTTATTCTAATGTGAATCAGGAACTGAGCAGAAATTTGTCTAGTAAGGGGTTTTCAATCAAAGGTGATGATGCTTCTATTGCTAGTGAGGCACTAAATGATGCTCAATTGCACCAGGGAAGAGATAGGGAATCACAGCTCTCTAGTAGTTGGGAGAGGCAAAAACAATCTTCAAGCTTCGAGAGTGGTGCTAAAAACACCCAGCCATTGGTAACATCTGAATCTTTTTCTACTGCTTTGTTAGAAGCTTCTGCAGCACCATCTTCCACCGGAACAGCTCCCCCAGATGTGAAAATTAATGAAACTGAAAAGATGTGGCATTATCAGGATCCATCTGGAAAAGTTCAAGGACCGTTTTCCATTGTGCAGCTTCGCAAATGGAATAACACTGGGTACTTCCCAGCTGATTTGAAGATTTGGAAAGCCGCTGAGAAACAAGACGAATCTATACTCTTAAAAGATGCCTTAGCAGGGAAGTTTTCAAAGGAACCATCAATGGTGAACAAAACTCCTCCTATGGCTCAAGCAGTGCATGATTTACATTACTCAGCCTCATACTCTGGGAAGTCTCATTTGGCAGCACAAAATAGTACTCTAGGTTCTTTGGCAAGTAGAACTTCTCAATTGGCAGTTGAGGTCCCCATGAATCCTGGAAATGGTTGGGGTTCTGATGCCGGTGTTAGAAATGAATCAACCAATCTTCCTTCGCCTACTCCCCAGACTACTCCAGGTGGGACTAAGGGGCAGGCTTTTGAAAATCAATGGTCACCAACACCTGTCCAGTTGGCCGGGTCTCTCTCAGGAAATTCATTTTCAGGTGGTCGTGAAGGTGTGCAAGCCTCCATGGTAATGCTTCCACAGAAGATTGCCCAAAATGCAGAAAATGGTTCAAGTTCACAACCTGGTATGACTTCAATTTCTAAATCAGAACAGGGGATGTTAAGCTCTACAGGTACAACTCAAGTACATCCTCAGGCAACAGCGGTGGCTCATGTTCTGCCTGCAGGTGCAAATATGCAAAACCAGGTTATGAGTAGCCATAACTCTCATGCTCAAGCTCAAGCTCAAGCTCAAGGGTGGGGTTCTGCGTTAGTTCCAAAGCCAGAACAACAGGCCTGGGGTAGTGCTCCATCTCAAATGGTAGAACCAAATAATTCTACTACCATGCCTGTCCAACCAGCTTCTCATGGCCCTTGGGGTGATGTTTCATCTTTCCAGAACTCTGCCTCATTTACCTCAGGAAATCCAGCTGGGAATTTACCCATGCCTGGCTTCCCGGGTATGACCACACCTGAGCCTTGGAGACCACCAACTTCAAGTAGTCAACCAAACATTGCAGCGGCAGCAGCACCACCAAATATACCTTGGGGCATGGGCATGCCAGGAAATCAGAATACTGGCTGGGGTGGGGCTCTACCTGGCAATATGAACGTAAACTGGACGATGCCAGCACAAGTGCCAGTGCCTGGAAATGCAAATCCAGGATGGGCTGTTCCTACTCAAGGGCAACCTCCAGTTAATGCAGCTGGCTGGGTTGCTCCTGGTCAAGGACTTCCACATGTAAATGCAAATGCAGGTTGGGTTGTGCCTGGTCAAGGGCTTGCACCTGGAAGTGCCAATCCTGGTTGGGGTGCATCAGCTGGTAATCCAGGCATCCCCAACCAAGGTGATCGTGGTGTCCATGGTGGAGATTCTGGCTATGGAGGTAAATCTTGGAACAGGCAGTCATCATTTGGCGGCGGCGGAGGTAGAGGAGGGGGTTCTTCCAGGCCTCCTGGCGGGGGACAAAGAGGAGTCTGCAGGTTTCATGAGAGTGGACGTTGCAAGAAAGGGGCTTCCTGTTATTATATACACAATTAA 4527 0.4531 MDVEDEEPSPNESPPSLHQQHSDEPPLLSTNAEPVIAGENNDEETAVAAEVVAADAMMDEAAAAVSGEGGEMLVVDAARDGSPLDGAGVEMEDEIEEDKGNEGTDVDVDDSMAVETGRVEEEANLAIGEEQVRDEEAIEAALMVEEEEEQLGGEGEEQQQGEEEKGDEVEPQQGEEEHQQEGEAEGDEEEQQLGEEGEEEEQLEEDGEEEEQQEGEEEEGDEEEVQEEEEEAGVDGGAAEATEFTEVEEIDAMEEQSVSVSGGKRKRGSGKNPKSTGRVSLKKKMEEDVCFICFDGGELVLCDRRGCPKAYHPSCINRDEAFFRAKGKWNCGWHLCSICEKNAYYMCYTCTFSLCKGCIKDAAILCVRGNKGFCETCMRTVTLIEQNEQGNNMGQVDFDDKNSWEYLFKDYYIDLKGKLSLTYDEVIQAKNPWKGSDMLLSKEESRDELFDASNDRGSDSDSSYEKVDLSRSKKRKAKKKAKSRSKEGSSYSAVTVLGADRPSADESFEWASRELLEFVMHMRDGDISVLSQFDVQALLLEYIKRNKLRDPRRKSQIICDVRLQNLFGKPRVGHFEMLKLLESHFLLKEDSQAEDLQGSVVDTEVSHLEGDGNVDSYLKSGKEKKRRSRKKGDERGLHSNIDDYAAIDNHNISLIYLRRNLVEDLLEDTENFQDKAVGSFVRIRISGSAQKQDLYRLVQVVGTCKAPEPYKVGKRMTDIMLEILNLNKTEIVSIDIISNQEFTEDECKRLRQSIKCGLISRLTVGDIQDKALTLQAVRVKDWLETETVRLSHLRDRASEKGRRKELRECVEKLQLLKTPEERQRRLEEIPEIHVDPKMDPSYESEEDEDEMEDKRQDNYMKPRGSAFGRRGREIASPRSGSSDSWSGTRSYSNVNQELSRNLSSKGFSIKGDDASIASEALNDAQLHQGRDRESQLSSSWERQKQSSSFESGAKNTQPLVTSESFSTALLEASAAPSSTGTAPPDVKINETEKMWHYQDPSGKVQGPFSIVQLRKWNNTGYFPADLKIWKAAEKQDESILLKDALAGKFSKEPSMVNKTPPMAQAVHDLHYSASYSGKSHLAAQNSTLGSLASRTSQLAVEVPMNPGNGWGSDAGVRNESTNLPSPTPQTTPGGTKGQAFENQWSPTPVQLAGSLSGNSFSGGREGVQASMVMLPQKIAQNAENGSSSQPGMTSISKSEQGMLSSTGTTQVHPQATAVAHVLPAGANMQNQVMSSHNSHAQAQAQAQGWGSALVPKPEQQAWGSAPSQMVEPNNSTTMPVQPASHGPWGDVSSFQNSASFTSGNPAGNLPMPGFPGMTTPEPWRPPTSSSQPNIAAAAAPPNIPWGMGMPGNQNTGWGGALPGNMNVNWTMPAQVPVPGNANPGWAVPTQGQPPVNAAGWVAPGQGLPHVNANAGWVVPGQGLAPGSANPGWGASAGNPGIPNQGDRGVHGGDSGYGGKSWNRQSSFGGGGGRGGGSSRPPGGGQRGVCRFHESGRCKKGASCYYIHN* 1509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2340 1508 MobiDBLite consensus disorder prediction 1261 1286 - -
Lja1g2340 1508 CDD Bbox1 335 361 - -
Lja1g2340 1508 SUPERFAMILY FYVE/PHD zinc finger 286 339 IPR011011 -
Lja1g2340 1508 SUPERFAMILY Plus3-like 647 775 IPR036128 GO:0003677
Lja1g2340 1508 MobiDBLite consensus disorder prediction 1 42 - -
Lja1g2340 1508 Gene3D - 648 776 IPR036128 GO:0003677
Lja1g2340 1508 MobiDBLite consensus disorder prediction 12 27 - -
Lja1g2340 1508 MobiDBLite consensus disorder prediction 939 960 - -
Lja1g2340 1508 MobiDBLite consensus disorder prediction 124 139 - -
Lja1g2340 1508 MobiDBLite consensus disorder prediction 450 471 - -
Lja1g2340 1508 ProSitePatterns Zinc finger PHD-type signature. 290 350 IPR019786 -
Lja1g2340 1508 ProSiteProfiles GYF domain profile. 992 1046 IPR003169 GO:0005515
Lja1g2340 1508 MobiDBLite consensus disorder prediction 877 891 - -
Lja1g2340 1508 Gene3D SWIB/MDM2 domain 498 595 IPR036885 -
Lja1g2340 1508 SMART gyf_5 993 1048 IPR003169 GO:0005515
Lja1g2340 1508 CDD PHD5_NSD 289 334 - -
Lja1g2340 1508 Gene3D - 993 1052 IPR035445 -
Lja1g2340 1508 MobiDBLite consensus disorder prediction 450 486 - -
Lja1g2340 1508 SUPERFAMILY GYF domain 984 1045 IPR035445 -
Lja1g2340 1508 ProSiteProfiles Zinc finger C3H1-type profile. 1483 1508 IPR000571 GO:0046872
Lja1g2340 1508 MobiDBLite consensus disorder prediction 1114 1140 - -
Lja1g2340 1508 Coils Coil 186 231 - -
Lja1g2340 1508 MobiDBLite consensus disorder prediction 165 179 - -
Lja1g2340 1508 ProSiteProfiles SWIB/MDM2 domain profile. 504 587 IPR003121 -
Lja1g2340 1508 ProSiteProfiles Zinc finger PHD-type profile. 287 353 IPR019787 -
Lja1g2340 1508 Pfam Plus-3 domain 651 754 IPR004343 GO:0003677
Lja1g2340 1508 MobiDBLite consensus disorder prediction 612 635 - -
Lja1g2340 1508 CDD SWIB-MDM2_like 510 585 - -
Lja1g2340 1508 MobiDBLite consensus disorder prediction 1182 1207 - -
Lja1g2340 1508 MobiDBLite consensus disorder prediction 821 891 - -
Lja1g2340 1508 MobiDBLite consensus disorder prediction 923 960 - -
Lja1g2340 1508 MobiDBLite consensus disorder prediction 821 840 - -
Lja1g2340 1508 CDD GYF 992 1047 IPR003169 GO:0005515
Lja1g2340 1508 ProSiteProfiles Plus3 domain profile. 646 779 IPR004343 GO:0003677
Lja1g2340 1508 SUPERFAMILY SWIB/MDM2 domain 506 586 IPR036885 -
Lja1g2340 1508 SMART PHD_3 289 335 IPR001965 -
Lja1g2340 1508 MobiDBLite consensus disorder prediction 1259 1286 - -
Lja1g2340 1508 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 381 IPR013083 -
Lja1g2340 1508 SMART rtf1 646 756 IPR004343 GO:0003677
Lja1g2340 1508 MobiDBLite consensus disorder prediction 140 164 - -
Lja1g2340 1508 PANTHER UNCHARACTERIZED 95 1508 - -
Lja1g2340 1508 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 19 95 1508 - -
Lja1g2340 1508 MobiDBLite consensus disorder prediction 124 279 - -
Lja1g2340 1508 Pfam GYF domain 995 1036 IPR003169 GO:0005515
Lja1g2340 1508 MobiDBLite consensus disorder prediction 1428 1490 - -
Lja1g2340 1508 MobiDBLite consensus disorder prediction 180 253 - -
Lja1g2340 1508 Pfam SWIB/MDM2 domain 513 585 IPR003121 -
Lja1g2340 1508 SMART swib_2 529 590 IPR019835 -
Lja1g2340 1508 MobiDBLite consensus disorder prediction 1107 1140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2340 Lja-Chr1 27099784 27112143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2340 287 374 PHD Transcription Factor Family AT5G36670 31.000 6.24e-07 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI or SNF-BAF60b Lja1g2340 Plus-3 1.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2340 - - gsj:114408271 1873.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2340 1 27099784 27112143 Lja1g2340 1 27099784 27112143 ECH