Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2337 ATGGCTGCGACGCTGAAATTTGAGGACCTCTCGCTCGACGATGTCGACAAACTGATCCATGCCGGAGATGAGGAGAAGGTTCAGGACGCAGGGATAAACACCTGCAATGGCTTGATGAAGCAGAGCTCTCTGTTTCAGAGCTGCGACTTGCCGCTTGATGTCGAGCCAGAGGACATCAGCAATCTGATTTTGCAAGGCTTTCATGGCAGAGATGGGAAGAAGCTTGAGGACGCTGGCTTAATGGAACAGTTGCCATTGAGGAGCCGGGCCATGTCAGCTAAAGTTAAAATCAGGAACAGAAACAGAAGAAGGATTGAAAGGGCAAAGAAGGATGAGGTGGTGCCTCGCGTTAGAACCCGAGCAATCATAATTGGCATGTCTTACCCACGTGATCCGGTGAATGAAGGGAGACTGCCGAAGATTATGGAGGAGGTGCATAAGATGTTTAGCATTGCAAAGTGCAAGTTCAAGATCCCATCCGAAGAAATACTTATTTTATGTGATAAAGGATCATTCCTGCGTCCAAACGGGAGAAGAATTCAGGATTCTATCACAGAGATGTTGGACACGGCACCAAGAGGCTCAGAAATGTTCTTATACGTAGCTGGCCATGCAAACAATGGAAAAAGTGGGCGTCATGACCCCTCTTCAGCTTCCATTGTCCCCACCAAGGTAAGCTTTTGGAATGGACTCTTGGAAAAGAATAGTTTAGAAAACCTTTTCAGGCTCTTGCATTTCTTGGGGCCTGAACCTTGGTGCAGCTGGGCAATGTGGCACAATCTGGTTCAAAGGCCTTATGAGATGAATGATCCAAGAGCCCTGAAATTGGTCAAGGGCATTTTGAAGACATTGATGTTAAGGAGAACGAAGGAAACCAAGGATAAACATGGAAGAAATTATCTGCATATTATTTTGAAGAAACTAAGGGGTACATTGAGATGGCTTAAGTATCTCAGGCCCAACATCAAGCATGGAGATTTCACAGATGAGGAAGCCAGAATCATTTGCAGCCCCTATGTTAACATAGGAAGCAGGTGGTCAATTATACGCTCAGTTGCCAGGCAGGACAGACAATGA 1077 0.4605 MAATLKFEDLSLDDVDKLIHAGDEEKVQDAGINTCNGLMKQSSLFQSCDLPLDVEPEDISNLILQGFHGRDGKKLEDAGLMEQLPLRSRAMSAKVKIRNRNRRRIERAKKDEVVPRVRTRAIIIGMSYPRDPVNEGRLPKIMEEVHKMFSIAKCKFKIPSEEILILCDKGSFLRPNGRRIQDSITEMLDTAPRGSEMFLYVAGHANNGKSGRHDPSSASIVPTKVSFWNGLLEKNSLENLFRLLHFLGPEPWCSWAMWHNLVQRPYEMNDPRALKLVKGILKTLMLRRTKETKDKHGRNYLHIILKKLRGTLRWLKYLRPNIKHGDFTDEEARIICSPYVNIGSRWSIIRSVARQDRQ* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2337 358 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 234 303 - -
Lja1g2337 358 SUPERFAMILY Homeodomain-like 312 351 IPR009057 -
Lja1g2337 358 Gene3D - 70 243 - -
Lja1g2337 358 PANTHER DNA REPAIR PROTEIN RAD5B 234 303 - -
Lja1g2337 358 Pfam SNF2-related domain 235 292 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2337 Lja-Chr1 27039473 27045416 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2337 198 303 RAD5 or RAD16-like Gene Family AT5G43530 45.370 1.65e-22 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lja1g2337 SNF2_N 3.2e-09 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2337 K15505 - lja:Lj1g3v3368870.1 212.231