Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2331 ATGAAGTTTGTTATGGCTGAAGCTTTGAAACCGAGCTTAAGAGGGGAGTTTATTTTTCAGCAAACAATTGGCGAGGAAATATGGTGCCTCAACGCCAACGCCAACGCCAACGCCGTTGTTGCCGGCGGTGGTGGAGGTGAGGATTTCGCCGTTGAAGACCTCTTTGACTTCTCTAACGGTGACTCTCTTCACGACGAGGAAGAAGAAAAGGACAATTCATCTCTTTCCTCGCACTCACAGGACAGTACCAACTCCAATTCCACCGGCGTTTCCAATGATTCCATTTTCTCCGCCGAATTAACCGTTCCGGCTGGTGATTTGGATGACCTAGAGTGGGTTTCTCACTTCGTCGACGACTCTCTCTCCCTCCCTGAACTTTCTCTTCTGTATCCTGTGATTTCCGAGCAGAAAATCACGTTTGCTGAACCAGAACCAGTGAAGAAAACTCAAACTCCGCTTTGTTTTCTCTCTGAAGTCAAAATCACCACGAAGGCGAGGAGCGTGAAGAGTAGAAAACCGAACCCGCGCGTGAGGTCACTTAGCCCCTTGCTCACGCGCTCATCTTCGCCGTCGTCGTGTTCCTCTGTGCTTTCATCGTCAACCGCGCCGCCTCCCGTGGCTCCGCCGGCGAAGAAGCTGAAGAGGAAGGCGGAGGAGGTGGAAGGCGCCGGTGCGCAGTCGCAGCGGCGGTGCAGTCATTGCCAGGTGCAGAAGACGCCGCAGTGGAGGACCGGTCCGCTAGGCGCCAAGACTCTCTGCAACGCGTGCGGGGTTCGCTACAAGTCCGGTCGGCTTTGTTCGGAGTATAGACCGGCGTGCAGCCCCACCTTCTGCGGTGAAATTCACTCCAACAGCCACCGGAAAGTGTTGGAGATAAGGAGGAGGAAGGAGGTGGTTGGACCGGATGCCGGTTTGACTCCGACCCAAATGGTTCCCACATGCTGA 945 0.546 MKFVMAEALKPSLRGEFIFQQTIGEEIWCLNANANANAVVAGGGGGEDFAVEDLFDFSNGDSLHDEEEEKDNSSLSSHSQDSTNSNSTGVSNDSIFSAELTVPAGDLDDLEWVSHFVDDSLSLPELSLLYPVISEQKITFAEPEPVKKTQTPLCFLSEVKITTKARSVKSRKPNPRVRSLSPLLTRSSSPSSCSSVLSSSTAPPPVAPPAKKLKRKAEEVEGAGAQSQRRCSHCQVQKTPQWRTGPLGAKTLCNACGVRYKSGRLCSEYRPACSPTFCGEIHSNSHRKVLEIRRRKEVVGPDAGLTPTQMVPTC* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2331 314 ProSitePatterns GATA-type zinc finger domain. 231 256 IPR000679 GO:0006355|GO:0043565
Lja1g2331 314 Coils Coil 210 230 - -
Lja1g2331 314 MobiDBLite consensus disorder prediction 180 201 - -
Lja1g2331 314 CDD ZnF_GATA 230 287 IPR000679 GO:0006355|GO:0043565
Lja1g2331 314 Gene3D - 223 298 IPR013088 GO:0006355|GO:0008270
Lja1g2331 314 MobiDBLite consensus disorder prediction 165 224 - -
Lja1g2331 314 MobiDBLite consensus disorder prediction 76 90 - -
Lja1g2331 314 Pfam GATA zinc finger 231 264 IPR000679 GO:0006355|GO:0043565
Lja1g2331 314 SMART GATA_3 225 279 IPR000679 GO:0006355|GO:0043565
Lja1g2331 314 MobiDBLite consensus disorder prediction 60 75 - -
Lja1g2331 314 ProSiteProfiles GATA-type zinc finger domain profile. 225 261 IPR000679 GO:0006355|GO:0043565
Lja1g2331 314 PANTHER GATA TRANSCRIPTION FACTOR 1 314 - -
Lja1g2331 314 PIRSF Txn_fac_GATA_plant 32 310 IPR016679 GO:0003677|GO:0005634|GO:0045893
Lja1g2331 314 PANTHER GATA TRANSCRIPTION FACTOR 1 314 - -
Lja1g2331 314 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 227 288 - -
Lja1g2331 314 MobiDBLite consensus disorder prediction 60 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2331 Lja-Chr1 27001349 27003183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2331 48 296 C2C2-Gata Transcription Factor Family AT4G36240 44.061 2.56e-52 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lja1g2331 GATA 1.4e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2331 - - gmx:100780311 333.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2331 1 27001349 27003183 Lja1g2331 1 27001349 27003183 ECH