Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2328 ATGAAGATCCAGTGTGATGTCTGTGACAAAGTGGAGGCCTCTGTGTTCTGTCCTGCAGATGAAGCTGCACTTTGCCATAGCTGTGATCGCGCCATCCATCATGCAAACAAGCTTGCAAGCAAACATGAGAGATTCACTCTGCATCACCCCTCCTCCATAGACTTGCCTCTTTGTGATATATGCCAAGAGAGAAGGGCGTGTCTATTTTGCCAAGAAGACAGAGCAATTCTTTGCAGAGAATGCGACCTTTCTATCCACAGAGCCAATGAACACACCCAGAAACATAACAGGTTTCTTCTCACGGGCTTGAAGCTCTCCAACACATGTTTGGACTCAGATTCATCGTCCACGGACAGAATCACTGTCTCTTCTGAAGCCAGAAACTCTCGATCCAGCAAAGCAAGCAGGCCTAGATCAGGTTCAAATGAAAATGCCTGCTCTTCTTTGAGGTTTGAAGATAACATGGCTAGTGACACTGGTTCAGCTTCAACAAGCAGCATTTCTGAATACTTGATTGAAACAATCCCTGGTTACTGCTTCGAAGATTTTCTTGATGCATCGTTTGCACCTAATGGTTTCTGTAAGAACTATGATTATCATTCAGGCTTCCAAGCTCAAACTCAAGTTCAATCCCCTCAACTTAGCCATTCGAGTCTTCTTCTCCAAAATGGCTACTGTACAGTTCCTGTACCTAGTCCTCCTTTCATGAAAAAATCTAGAAGCTCTAGATAA 732 0.4413 MKIQCDVCDKVEASVFCPADEAALCHSCDRAIHHANKLASKHERFTLHHPSSIDLPLCDICQERRACLFCQEDRAILCRECDLSIHRANEHTQKHNRFLLTGLKLSNTCLDSDSSSTDRITVSSEARNSRSSKASRPRSGSNENACSSLRFEDNMASDTGSASTSSISEYLIETIPGYCFEDFLDASFAPNGFCKNYDYHSGFQAQTQVQSPQLSHSSLLLQNGYCTVPVPSPPFMKKSRSSR* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2328 243 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 206 - -
Lja1g2328 243 Gene3D Classic Zinc Finger 1 98 - -
Lja1g2328 243 Pfam B-box zinc finger 56 92 IPR000315 GO:0008270
Lja1g2328 243 CDD Bbox1_BBX-like 57 100 - -
Lja1g2328 243 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Lja1g2328 243 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lja1g2328 243 CDD Bbox1_BBX-like 5 47 - -
Lja1g2328 243 SMART bboxneu5 53 100 IPR000315 GO:0008270
Lja1g2328 243 SMART bboxneu5 4 47 IPR000315 GO:0008270
Lja1g2328 243 PANTHER B-BOX ZINC FINGER PROTEIN 20 1 206 - -
Lja1g2328 243 MobiDBLite consensus disorder prediction 110 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2328 Lja-Chr1 26973512 26974831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2328 1 198 C2C2-CO-like Transcription Factor Family AT1G75540 53.081 6.85e-63 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lja1g2328 zf-B_box 1.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2328 - - gmx:100800981 305.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2328 1 26973512 26974831 Lja1g2328 1 26973512 26974831 ECH
Lja1g2328 1 26973512 26974831 Lja2g0528 2 4767128 4770807 ECH
Lja1g2328 1 26973512 26974831 Lja4g3160 4 59731619 59734093 ECH