Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2326 ATGTTTGTTACTTCCATGGCTAAACCGAAGCCTCCGAGACGAACCCTAGATTCATTCACAGTCAAACACATCAACAAAACCGTTAGACCGGGCGATTGCGTGCTTATGCGACCTTCTGAGCCGGGGAAATCGTCGTATGTGGCTAGGATCGAGCGGATCGAAGCTGATTCCCGAGGCGCCAACGTCAAGGTTCACGTCCGCTGGTACTACCGTCCGGAGGAATCAATCGGCGGCCGCCGTCAGTTTCACGGCTCCAAGGAGGTTTTCCTCTCCGATCACCTTGATTTTCAGAGCGCCGACACTATTGAAGCCAAGTGTACGGTCCACAGTTTCAAGAGCTATACTAAGCTCGATGCCGTTGGGAATGAAGATTTCTTCTGCCGTTTTGAGTATAATTCCTCCACCGGCGCCTTCAATCCTGATCGTGTTGCCGTGTATTGTAAATGTGAGATGCCGTACAATCCTGATGATCTAATGGTCCAGTGTGAGGGGTGCAGTGATTGGTTCCATCCTGCGTGTATAGACATGACTGTGGAGGAAGCTGAAAGACTTGACCACTTTTATTGTGAAGGTTGTTCTGCTGAAGGTCAAAAAAGTTTGCAAAATTCTCATTCTGCTACGAGATCAGATACAAAGGTGGATACAAAACGCCGTCGAAGGCAATAG 666 0.4895 MFVTSMAKPKPPRRTLDSFTVKHINKTVRPGDCVLMRPSEPGKSSYVARIERIEADSRGANVKVHVRWYYRPEESIGGRRQFHGSKEVFLSDHLDFQSADTIEAKCTVHSFKSYTKLDAVGNEDFFCRFEYNSSTGAFNPDRVAVYCKCEMPYNPDDLMVQCEGCSDWFHPACIDMTVEEAERLDHFYCEGCSAEGQKSLQNSHSATRSDTKVDTKRRRRQ* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2326 221 ProSiteProfiles Zinc finger PHD-type profile. 144 195 IPR019787 -
Lja1g2326 221 SMART BAH_4 26 142 IPR001025 GO:0003682
Lja1g2326 221 PANTHER CHROMATIN REMODELING PROTEIN SHL 6 220 IPR045205 GO:0006325|GO:0035064
Lja1g2326 221 Gene3D - 4 140 IPR043151 -
Lja1g2326 221 ProSitePatterns Zinc finger PHD-type signature. 147 192 IPR019786 -
Lja1g2326 221 PANTHER OS08G0421900 PROTEIN 6 220 - -
Lja1g2326 221 Pfam BAH domain 27 141 IPR001025 GO:0003682
Lja1g2326 221 Pfam PHD-finger 146 194 IPR019787 -
Lja1g2326 221 SUPERFAMILY FYVE/PHD zinc finger 135 198 IPR011011 -
Lja1g2326 221 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 208 IPR013083 -
Lja1g2326 221 SMART PHD_3 146 193 IPR001965 -
Lja1g2326 221 ProSiteProfiles BAH domain profile. 26 142 IPR001025 GO:0003682
Lja1g2326 221 MobiDBLite consensus disorder prediction 197 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2326 Lja-Chr1 26931425 26935766 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2326 46 144 Core DNA Replication Machinery Family AT4G14700 28.283 5.66e-09 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lja1g2326 BAH 1.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2326 - - gmx:100787968 416.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2326 1 26931425 26935766 Lja1g2326 1 26931425 26935766 ECH