Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2294 ATGGAGGGAGAACAACATGATATCTCAAATGGAGGTGGTTTATATGTGAAGGTGATGACTGACGAACAAATGGAACTTCTCAGGCAACAGATTTCTGTCTACGCCACCATATGTGACAGCCTTGTTGAGATGCACAAGGCCATCACCACTCAACAAGACCTCGCAGGACTGAGGCTGGGAAATTTGTACTGTGATCCACTAATGGTGTGTTCTGGACACAAGATAACTGCTAGGCAGCGCTGGACTCCGACGCCTCTGCAGCTTCAAATGCTCGAGCAAATTTTCGATCAAGGCAATGGAACTCCGAGCAAGCAGAAGATCAAGGAGATTGCTATTGAACTGGGGCAGCATGGTCAGATATCAGAGACGAATGTTTACAATTGGTTCCAGAACAGAAGGGCTCGTTCGAAGCGGAAGCAACTAGCTCCCACCACCCCGAGTCATGCTGAGCTGGAGGCGGCTGAGACAGAAGCTGTTGAGTCTCCAAAAGAGAAAAGGATATCTGCTGCAGAAAGTGTTCAAGTTCTTCAACCCTATGAGAATTCTTCATCACCTCACAGGCTCAAGGATTTTTACATCCAGAGTCCTGACATAGGATTTGAGCAATTGTTGGGTAAAATAGAAGCTGGAGGCTGCTTTAGTTCTTATTTTCTGTGA 657 0.4658 MEGEQHDISNGGGLYVKVMTDEQMELLRQQISVYATICDSLVEMHKAITTQQDLAGLRLGNLYCDPLMVCSGHKITARQRWTPTPLQLQMLEQIFDQGNGTPSKQKIKEIAIELGQHGQISETNVYNWFQNRRARSKRKQLAPTTPSHAELEAAETEAVESPKEKRISAAESVQVLQPYENSSSPHRLKDFYIQSPDIGFEQLLGKIEAGGCFSSYFL* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2294 218 PANTHER WUSCHEL-RELATED HOMEOBOX 13 1 218 IPR044559 GO:0003700
Lja1g2294 218 SUPERFAMILY Homeodomain-like 77 140 IPR009057 -
Lja1g2294 218 CDD homeodomain 78 140 IPR001356 GO:0003677
Lja1g2294 218 PANTHER TRANSCRIPTION FACTOR HOMOBOX-WOX FAMILY-RELATED 1 218 - -
Lja1g2294 218 MobiDBLite consensus disorder prediction 137 165 - -
Lja1g2294 218 Gene3D - 79 143 - -
Lja1g2294 218 Pfam Homeodomain 78 138 IPR001356 GO:0003677
Lja1g2294 218 ProSiteProfiles 'Homeobox' domain profile. 74 139 IPR001356 GO:0003677
Lja1g2294 218 SMART HOX_1 76 143 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2294 Lja-Chr1 26667638 26669105 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2294 14 198 Wox Gene Family AT4G35550 58.163 1.03e-71 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Lja1g2294 Homeodomain 2.9e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2294 - - pvu:PHAVU_009G012200g 340.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2294 1 26667638 26669105 Lja1g2294 1 26667638 26669105 ECH