Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2289 ATGGTTTCATTTCAACAGAGCATGCAGCATATTCGAAATTACTACTACTCAGAAGCTCAAATGATAGGAAGTAGCTTTCCCCGGAGATTCATCTCACAAACATACAAGAACAGTTTCTCAAAGCCAAGATCAAATGCTGCAGAGATCAAATTATTGGCTGCTAAGAAACACAGTGAAGCAGAAAAGAGACGTAGAATGAGAATCAATGGTCAATATGACACCCTCCGCAACATCCTCCCCAACATAATCAAAAAGGACAAGGCAACAGTACTGGTAGAGACTATCAAGCAAGTGAAGGAGCTGAGGAAAAAAGTATCCAAATTGGAAGTTGATGGCCCAAAGGAGGTTAAGTTTCCTAGTGGGGCAGATAGACTGAACTTGGTAAAATGTAATGGTGAGGAGGGTATAGTGAAGGCCACTTTCAGTTGTGAGGATAGGCCTGAATTGATGTCAGCTATAGCAAGGGCTCTCGGATCAGTGCAAGCCAATGTGATAAAAGCTGAGATGATGACTCTTGGTGGAAGAACCAGAAGTGTGTTGTGGGTGCAAGGTCTTGGTGATGAAGGTTTGGGGAAGCTCAAGAGTACTTTGAAGGTTGTCATGCACAAGCCAACCTTCAGGATGCGGCATTTTACTCAATAA 642 0.4299 MVSFQQSMQHIRNYYYSEAQMIGSSFPRRFISQTYKNSFSKPRSNAAEIKLLAAKKHSEAEKRRRMRINGQYDTLRNILPNIIKKDKATVLVETIKQVKELRKKVSKLEVDGPKEVKFPSGADRLNLVKCNGEEGIVKATFSCEDRPELMSAIARALGSVQANVIKAEMMTLGGRTRSVLWVQGLGDEGLGKLKSTLKVVMHKPTFRMRHFTQ* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2289 213 ProSiteProfiles ACT domain profile. 138 213 IPR002912 -
Lja1g2289 213 Coils Coil 91 111 - -
Lja1g2289 213 PANTHER TRANSCRIPTION FACTOR BHLH131 10 207 - -
Lja1g2289 213 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 52 101 IPR011598 GO:0046983
Lja1g2289 213 PANTHER TRANSCRIPTION FACTOR BHLH30 10 207 IPR045847 GO:0003700|GO:0006355
Lja1g2289 213 CDD ACT_UUR-ACR-like 140 197 - -
Lja1g2289 213 SUPERFAMILY ACT-like 138 203 IPR045865 -
Lja1g2289 213 Gene3D - 52 111 IPR036638 GO:0046983
Lja1g2289 213 Pfam Helix-loop-helix DNA-binding domain 56 101 IPR011598 GO:0046983
Lja1g2289 213 Gene3D - 137 209 - -
Lja1g2289 213 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 55 110 IPR036638 GO:0046983
Lja1g2289 213 SMART finulus 58 107 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2289 Lja-Chr1 26626059 26627095 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2289 51 182 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G25710 41.481 2.18e-24 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja1g2289 HLH 1.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2289 - - gmx:102662951 285.034