Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2288 ATGATGGCTGCAAGCTGGGATGGAAGTAATGACCCTGGCAGCCAGTCGGATGATAGCTTTCATTTTGAGAGGTTGCACATTGAGCCTATTTACGACGCCTTTGTGTGTCCGCTGACGAAGCAAGTTATGCGTGATCCTGTTACTTTAGAAAATGGACAGACTTATGAACGTGAAGCAATTGAAAAATGGTTCAGGGAATGCAAGGAGAGTGGGCGGAAACTGGTTTGCCCTTTGACCCTGCACGAATTAAAAAGCACAGAACTGAATCCAAGTATGGCTTTGCGTAACACCATTGAAGAGTGGATTGCCAGGAATGAAGCTGCACAGCTGGATATGGCTCGCCGTTCATTGAATACGGGGAGTCCGGAAATTGAAACTCTCCAGGCATTAAAGTATGTCCAGCACGTCTGTCAAAGAAGTCGGTCAAATAAGCACATGGTCCGCAGTGCAGGGCTTGTACCAATGATTGTTGACATGCTGAAGAGTAGCAGCCGTAAGATTCGTTGTAGAGCTTTGGAAACCCTTAGAATTGTGGTAGAGGAAGATGATGAGAATAAGGAAATATTGGCCGAAGGGGACACTGTTCGTACGGTAGTTAAATTCCTTTCTCATGAGCTTTCTAAAGAAAGAGAGGAGGCTGTCTCCTTGCTTTACGAGCTCTCAAAATCTGAAACCCTTTGTGAGAAGATTGGTTCAATCAATGGATCTATTCTTATATTGGTTGGAATGACAAGCAGCAAATCAGAAGACCTTTCCACTGTTCAGAAGGCTGATAAAACATTAGAGAATCTGGAGAAGTGTGAGAATAATGTGCGGCAGATGGCTGAAAATGGTAGATTGCAGCCTCTTCTGACCCATCTTCTTGAAGGTTCACCAGAAACTAAACTCTCCATGGCTGGATACCTTGGTGATCTCGTTTTGAACAACGATGTCAAAGTCTTTGTTGCTAAAACTGTAGGTTCATCTCTAATCAATATAATGAAAAGTGGTAATATGCAGTCAAGAGAAGCTGCACTGAAGGCACTAAATCAGATATCATGTGAGCCAAGCGCAAAGGTTTTAATAGAAGCCGGCATCCTTTCCCCTCTTGTCAAGGACCTGTTTGCAGTGGGTCATAATCAGCTTCCAACACGCTTAAAGGAGGTCTCTGCTACAATTCTTGCCAATGTTGTGAACTCGGGTGAAGACTTTGATTCCATTCCATTTGGAACTGATGACCAAACTCTGGTCTCAGAGGATATAGTTCATAATCTCCTCCATCTTATAAGCAACACTGGTCCAGCAATCGAGTGCAAACTTCTCCAAGTTCTTGTTGGACTTACCAGTTCTCCAACTACAGTCGTGGGTGTTGTTGCTGCAATCAAAAGCTCTGGTGCCACTATCAGTCTAGTTCAATTCATTGAGGCACCACAGAAAGATCTGCGTGTAGCTTCCTTAAAACTTCTTCAGAATTTGTCACCCCACATGGGTCAGGAATTAGCTGATGCACTACGTGGCTCAGTTGGACAGCTTGGCACTCTAGTTAAAGTCATATCAGAAAATACAGGAATCACTGAGGAGCAGGCAGCGGCTGTTGGCCTTTTAGCAGATCTTCCCGAGAGAGATTTGGGTCTCACGAGACAGCTACTGGACGAAGATGCCTTTTTGATGGTCATATCTAGGGTGATTGCCATCAGGCAGGGAGAGATCAGAGGCAGTCGCTTCCTGACACCGTTTCTTGAAGGGCTTGTGAAGATTCTTGCAAGAGTTACATATGTCTTGGCTGATGAGCCAGATGCCGTTGCACTTTGCCGCAATCACAATCTCGCTGCCCTGTTTATCGAACAGCTTCAAGCCAATGGGCTTGATAATGTTCAGATGGTTTCTGCTACAGCTTTAGAGAATTTATCGCAAGAATCAAAAAATTTAACCAGAATGCCGGAGCTGCCACCGCCCAGTTTTTGTGCTTCAATCTTTGCATGCTTTGACAACAAGCCAGTCATTACTGGATTGTGTAAGATCCACAGAGGGTTGTGCTCTTTAAAAGAAACATTTTGCCTTTATGAAGGGCAGGCAGTGCTCAAGTTAGTAGCTCTACTGGACCACACAAATGTGACTGTGGTTGAGGCGGCGCTCGCAGCGTTATCTACTTTGATAGATGATGGGGTAGATATTGAGCAAGGAGTGTTGGTTTTGTGTGAAGCAGAGGCAGTGAGGCCTATACTTGATGTGTTACTTGAGAAAAGGTCAGAGAATTTGATGAGGAGGGCAGTTTGGGCAGCAGAGAGGCTATTAAGAACAGATGATATAGCCTATGAAGTTTCGGGAGATCAAAATGTGAGTACTGCACTTGTGGATGCTTTCCAGCATGGTGATTATAGAACTAGACAGATAGCTGAGAAAGCCCTAAAGCATGTTGATAAGATACCCAACTTCTCAGGAATCTTTCCAAACATGGGATGA 2442 0.4447 MMAASWDGSNDPGSQSDDSFHFERLHIEPIYDAFVCPLTKQVMRDPVTLENGQTYEREAIEKWFRECKESGRKLVCPLTLHELKSTELNPSMALRNTIEEWIARNEAAQLDMARRSLNTGSPEIETLQALKYVQHVCQRSRSNKHMVRSAGLVPMIVDMLKSSSRKIRCRALETLRIVVEEDDENKEILAEGDTVRTVVKFLSHELSKEREEAVSLLYELSKSETLCEKIGSINGSILILVGMTSSKSEDLSTVQKADKTLENLEKCENNVRQMAENGRLQPLLTHLLEGSPETKLSMAGYLGDLVLNNDVKVFVAKTVGSSLINIMKSGNMQSREAALKALNQISCEPSAKVLIEAGILSPLVKDLFAVGHNQLPTRLKEVSATILANVVNSGEDFDSIPFGTDDQTLVSEDIVHNLLHLISNTGPAIECKLLQVLVGLTSSPTTVVGVVAAIKSSGATISLVQFIEAPQKDLRVASLKLLQNLSPHMGQELADALRGSVGQLGTLVKVISENTGITEEQAAAVGLLADLPERDLGLTRQLLDEDAFLMVISRVIAIRQGEIRGSRFLTPFLEGLVKILARVTYVLADEPDAVALCRNHNLAALFIEQLQANGLDNVQMVSATALENLSQESKNLTRMPELPPPSFCASIFACFDNKPVITGLCKIHRGLCSLKETFCLYEGQAVLKLVALLDHTNVTVVEAALAALSTLIDDGVDIEQGVLVLCEAEAVRPILDVLLEKRSENLMRRAVWAAERLLRTDDIAYEVSGDQNVSTALVDAFQHGDYRTRQIAEKALKHVDKIPNFSGIFPNMG* 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2288 813 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 43 2 811 - -
Lja1g2288 813 CDD RING-Ubox_PUB 34 79 IPR045210 -
Lja1g2288 813 ProSiteProfiles U-box domain profile. 29 108 IPR003613 GO:0004842|GO:0016567
Lja1g2288 813 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 30 106 IPR013083 -
Lja1g2288 813 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 811 - -
Lja1g2288 813 Gene3D - 569 802 IPR011989 -
Lja1g2288 813 Gene3D - 107 311 IPR011989 -
Lja1g2288 813 SUPERFAMILY ARM repeat 116 444 IPR016024 -
Lja1g2288 813 Gene3D - 316 486 IPR011989 -
Lja1g2288 813 Coils Coil 257 277 - -
Lja1g2288 813 SUPERFAMILY RING/U-box 24 111 - -
Lja1g2288 813 SUPERFAMILY ARM repeat 458 799 IPR016024 -
Lja1g2288 813 SMART Ubox_2 33 101 IPR003613 GO:0004842|GO:0016567
Lja1g2288 813 SMART arm_5 140 180 IPR000225 GO:0005515
Lja1g2288 813 SMART arm_5 590 631 IPR000225 GO:0005515
Lja1g2288 813 SMART arm_5 267 307 IPR000225 GO:0005515
Lja1g2288 813 SMART arm_5 672 713 IPR000225 GO:0005515
Lja1g2288 813 SMART arm_5 347 392 IPR000225 GO:0005515
Lja1g2288 813 SMART arm_5 182 222 IPR000225 GO:0005515
Lja1g2288 813 Pfam U-box domain 32 106 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2288 Lja-Chr1 26621525 26625401 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2288 3 813 U-box Gene Family AT1G76390 65.356 0.0 1034
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2288 - - adu:107460240 1427.15