Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2286 ATGAATTTGTCTTGGGTTGTTTGCTGGGTGGTGGCGGCGGTGGTGCTCCGGCCAGTGTCTCCGTACGTGGCAGCAGCTGCAAATATCTCCACCTCAAGACCCGCCGTTGTGAACATCGGAGCCATCTTCACCTTCGATTCCTTGATTGGGAAAGTAGCTAAAATTGCCATGGAGCAAGCCGTCAACGATGTAAACGCCAACACTAGCACCATTCTTCAAACAACCAAACTTGTTCTCCATATGCAAAATTCCGATTGCGGTGGTTTTGAGGGCATGGTTCAAGCCTTGAGGTTCATGGAGACTGATGTAGTAGCTATACTAGGTCCACAATCTTCTGTAGTTGCTCACATAATATCACATGTTGCGAATGAGCTTCAGGTTCCTTTGTTGTCATTTGCTGCAACAGACCCTACCCTCTCGTCGCTGCAGTTCCCGTTTTTTGTGAGGACTACTCAGAGTGATTTCTATCAAATGACTGCAGTTGCTGAAGTGATTGATTATTATGGTTGGAAGGAGGTGATTGCCATATATGTAGATGATGATTATGGAAGAAATGGTGTGTCTGCATTAGATGATGCTTTATCAGCCAGGCGCTGTAGAATCTCCTACAAGGCGGGGATTCGATCAGGGCCTCAAATTGACCGGACCGAAATCACCAATTTGCTTGTGCAAGTGGCGCTGATGCCATCTCGAGTCATTGTTCTCCATGTACATTCTGATTTGGGACTTACAATCTTCAATGTGGCGCGGTTTCTTGGGATGAAAAAGGAGGGATATGTTTGGATAGCCACAGACTGGCTCTCACCGGTTCTAGATTCTGCATCTCTTCCTTCTGACACAACGGATTTTCTGCAGGGAGTGCTTGCTTTGCGCCAGCACACGCCTGATTCAGCTAGAAAAAAAACATTTTTCTCTAGGTGGAACAGGTTAACTGGTGGCTCTTTGGGGTTACATTCTTATGGCCTCTACGCTTATGATTCTGTTTGGCTGGTTGCGCGTGCGATTGACGCATTTTTCAGTCAGGGTGGGATTGTTTCATTTACTAATTTGACTAGTTTACCTAACGATAAGGAAGATGGTCTCAACCTTGATGCAATGAGCATTCTTGATAATGGAACACTTCTGCTGAATAACATATTGCGGAATGATTTTGCTGGACTAACAGGTCAGGTGAAATTTGATTCAGACAGATCTCTTGTTCGTCCCGCCTATGACATCATTAATGTGGTTGGGACTGGCTTTCGTCGGATTGGTTACTGGTCCAACTATTCTGGTCTGTCAATTGTACCTCCTGAGACCTTGTATGCTAAGCCACCTAATAGATCAAGTTCAAACCAGAACCTTCTAAGTGTCATATGGCCTGGAGAAACAACATCCAAGCCTCGAGGATGGGTCTTCCCAAGTAATGGAAAACAATTGAGAATTGGTGTTCCTATCCCTGTCAGTTTCCCTGAATTTGTGTCCCCAGTGCCGGGAACAGATATGTTTAAAGGTTTCTCTATTGATGTATTCCAAGCAGCTGTAAACTTGTTGCCATATGCTGTTCCTTACCGCTTTGTCGCATTTGGAGATGGCCTAAAAAATCCAAGTTACACAGAACTTGTCAACCTAATCACCACTGGTGATATTGATGGTGCTGTCGGTGACATTGCCATTGTCACAAATCGGACAAGGATTGCAGATTTTACGCAGCCATTTGCTGCATCTGGGCTTGTTGTGGTGGCCCCTTTTAAGAAGATCAATTCTGGCGGTTGGGCTTTCCTGCAGCCTTTCACTCCTTTTATGTGGATTGTGACTGCTTGTTCCTTCATTTTCGTTGGGGTCGTTGTATGGACTCTAGAACACAGGATAAATGATGAGTTCAGAGGTCCACCTAAACAACAAATTATAACCATTTTGTGGTTTAGCCTGTCAACTCTATTTTTTTCCCACAGAGAGAATACGATGAGTACTCTTGGTCGCATTGTGATACTTATGTGGATGTTTGTGGTTTTGATCATTAATTCCAGCTACACTGCAAGTTTAACATCCATACTCACGGTGCAGCAGTTATATTCTCCAATCGATGGAATAGATAGCTTAAAAGCTACTGATGAACCTATAGGGTTCCAAGTGGGTTCATTTGCGGAACGTTACTTGTCTGAAGATATTGGAATATCCAAATCTAGACTTGTTCCCCTTGAAACTCAAGAAGAATATGCCAAAGCACTCGAGCTAGGGCCTAATAAAGGAGGTGTTGCTGCTATTGTTGATGAACGACCCTATGTTGAAATCTTCTTATCAACTCAGTGCAAATTCAGGATTGTTGGTCTGGAGTTCACAAGAACCGGCTGGGGTTTTGCATTCCCTCGGGACTCCCCTTTGGCTGTGGACTTGTCAACTGCCATTCTACAACTTTCTGAAGCTGGTGAGCTGCAGCGGATTCATGATAAGTGGATGACGCGGCGCACCTGTAGTTTAGATAACACTGAAATTGATTCAGATCGGCTTCAACTTAAAAGCTTCTGGGGTCTTTTTGTCATTTGCGGGATGGCTTGCTTTATTGCCCTTATCATATATTTTTTGCAGATTATGTGTCAGTTATCACATTCTGCTCATTCTGATTCTGCTGTAATTGCTAGTCCAATTCGAAGATTTCTCTCACTCATTGATGAAAAAAAAGATACATCAAGGAGTGGGACAAGAAAGAGGAGTGGAGAAGAAAGCTCACTTGAGGATCAACTGGGAAGGCAATCAAAGAGGATACAAACAGAAACAACAATTGAGTTCAATCAAACTATTAAGTAA 2787 0.4367 MNLSWVVCWVVAAVVLRPVSPYVAAAANISTSRPAVVNIGAIFTFDSLIGKVAKIAMEQAVNDVNANTSTILQTTKLVLHMQNSDCGGFEGMVQALRFMETDVVAILGPQSSVVAHIISHVANELQVPLLSFAATDPTLSSLQFPFFVRTTQSDFYQMTAVAEVIDYYGWKEVIAIYVDDDYGRNGVSALDDALSARRCRISYKAGIRSGPQIDRTEITNLLVQVALMPSRVIVLHVHSDLGLTIFNVARFLGMKKEGYVWIATDWLSPVLDSASLPSDTTDFLQGVLALRQHTPDSARKKTFFSRWNRLTGGSLGLHSYGLYAYDSVWLVARAIDAFFSQGGIVSFTNLTSLPNDKEDGLNLDAMSILDNGTLLLNNILRNDFAGLTGQVKFDSDRSLVRPAYDIINVVGTGFRRIGYWSNYSGLSIVPPETLYAKPPNRSSSNQNLLSVIWPGETTSKPRGWVFPSNGKQLRIGVPIPVSFPEFVSPVPGTDMFKGFSIDVFQAAVNLLPYAVPYRFVAFGDGLKNPSYTELVNLITTGDIDGAVGDIAIVTNRTRIADFTQPFAASGLVVVAPFKKINSGGWAFLQPFTPFMWIVTACSFIFVGVVVWTLEHRINDEFRGPPKQQIITILWFSLSTLFFSHRENTMSTLGRIVILMWMFVVLIINSSYTASLTSILTVQQLYSPIDGIDSLKATDEPIGFQVGSFAERYLSEDIGISKSRLVPLETQEEYAKALELGPNKGGVAAIVDERPYVEIFLSTQCKFRIVGLEFTRTGWGFAFPRDSPLAVDLSTAILQLSEAGELQRIHDKWMTRRTCSLDNTEIDSDRLQLKSFWGLFVICGMACFIALIIYFLQIMCQLSHSAHSDSAVIASPIRRFLSLIDEKKDTSRSGTRKRSGEESSLEDQLGRQSKRIQTETTIEFNQTIK* 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2286 928 SMART GluR_14 474 815 IPR001320 GO:0015276|GO:0016020
Lja1g2286 928 MobiDBLite consensus disorder prediction 890 912 - -
Lja1g2286 928 Pfam Ligand-gated ion channel 815 846 IPR001320 GO:0015276|GO:0016020
Lja1g2286 928 Gene3D - 779 812 - -
Lja1g2286 928 CDD PBP1_GABAb_receptor_plant 38 430 IPR044440 -
Lja1g2286 928 Gene3D - 743 778 - -
Lja1g2286 928 PRINTS Metabotropic glutamate GPCR signature 157 173 IPR000337 GO:0004930|GO:0007186|GO:0016021
Lja1g2286 928 PRINTS Metabotropic glutamate GPCR signature 138 157 IPR000337 GO:0004930|GO:0007186|GO:0016021
Lja1g2286 928 PRINTS Metabotropic glutamate GPCR signature 173 190 IPR000337 GO:0004930|GO:0007186|GO:0016021
Lja1g2286 928 PRINTS Metabotropic glutamate GPCR signature 106 132 IPR000337 GO:0004930|GO:0007186|GO:0016021
Lja1g2286 928 SUPERFAMILY Periplasmic binding protein-like I 32 465 IPR028082 -
Lja1g2286 928 Gene3D - 55 401 - -
Lja1g2286 928 Pfam Bacterial extracellular solute-binding proteins, family 3 494 814 IPR001638 -
Lja1g2286 928 Gene3D - 153 426 - -
Lja1g2286 928 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 26 920 - -
Lja1g2286 928 CDD GluR_Plant 471 812 - -
Lja1g2286 928 PIRSF IGluLR_plant 2 927 IPR017103 -
Lja1g2286 928 Gene3D - 584 710 - -
Lja1g2286 928 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 50 66 - -
Lja1g2286 928 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 324 336 - -
Lja1g2286 928 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 111 139 - -
Lja1g2286 928 Gene3D - 467 583 - -
Lja1g2286 928 MobiDBLite consensus disorder prediction 890 919 - -
Lja1g2286 928 PANTHER GLUTAMATE RECEPTOR 3.3 26 920 - -
Lja1g2286 928 SUPERFAMILY Periplasmic binding protein-like II 448 814 - -
Lja1g2286 928 Pfam Receptor family ligand binding region 54 411 IPR001828 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2286 Lja-Chr1 26597527 26601881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2286 31 914 Ion Channels AT1G42540 61.958 0.0 1185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2286 K05387 - gmx:102661260 1413.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2286 1 26597527 26601881 Lja1g2286 1 26597527 26601881 ECH