Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2278 ATGACTCGTCCCTTCAGGTACTTAGGTGAGCACACCTCGTCCTCCACCTCACCTGATTCCGCCGCCACCGTCGACTCCGACTTCGTCGTCATCCTCGCCGCTCTCCTCTGCGCTCTCATCTGCGTCCTCGGCCTGGTCGCCGTCGCCCGCTGCGCCTGTCTCCGGCGCCTACGCCTCTCCTCCACCACCGCTCCGCCTCTTCCACCTCCTCTTCCCGCCGCTGCCAACAAAGGCGTCAAGAAGAAGGTCCTCCGCTCCATCCCGAAGCTCACCGCGACCGCCGAATCCGCGGTGAAATTCTCCGATTGCGCGATCTGTCTGACGGAGTTCGCCGCCGGAGACGAAATCAGAGTGCTGCCTCAGTGCGGCCATGGCTTCCACGTGTCCTGCATCGACGCGTGGCTCAAATCGCATTCTTCGTGCCCTTCCTGCCGACAGATTCTGGTAGCGGCTTCCAGATGCGACAAGTGCGGCGGGATTCCTGCCCCTGCCGCCAGCACCAGCTCCACCACCGCGCCTCCGCCACCGGAATCCGAAGCCAGATTAAAAGTAAGAGAAGACGATGCCAACAGATCGGAGTTCGTTTGA 588 0.6241 MTRPFRYLGEHTSSSTSPDSAATVDSDFVVILAALLCALICVLGLVAVARCACLRRLRLSSTTAPPLPPPLPAAANKGVKKKVLRSIPKLTATAESAVKFSDCAICLTEFAAGDEIRVLPQCGHGFHVSCIDAWLKSHSSCPSCRQILVAASRCDKCGGIPAPAASTSSTTAPPPPESEARLKVREDDANRSEFV* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2278 195 Pfam Ring finger domain 102 145 IPR001841 -
Lja1g2278 195 SUPERFAMILY RING/U-box 88 150 - -
Lja1g2278 195 MobiDBLite consensus disorder prediction 7 21 - -
Lja1g2278 195 PANTHER RING-H2 FINGER PROTEIN ATL8 1 186 - -
Lja1g2278 195 SMART ring_2 103 144 IPR001841 -
Lja1g2278 195 MobiDBLite consensus disorder prediction 161 195 - -
Lja1g2278 195 CDD RING-H2_PA-TM-RING 102 145 - -
Lja1g2278 195 MobiDBLite consensus disorder prediction 1 21 - -
Lja1g2278 195 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 186 - -
Lja1g2278 195 MobiDBLite consensus disorder prediction 179 195 - -
Lja1g2278 195 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Lja1g2278 195 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 149 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2278 Lja-Chr1 26530079 26531689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2278 5 190 C3H Transcription Factor Family AT1G20823 60.622 9.97e-64 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2278 - - gmx:100794614 234.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2278 1 26530079 26531689 Lja1g2278 1 26530079 26531689 ECH