Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2274 ATGTTAGCCATGGAAGATGTTCTGTGTGAACTCAGTGATCATGAAAAGAGAAACGAGCAAGGCTTGCCACCAGGCTTCAGGTTTCATCCAACTGATGAAGAACTCATCACCTTCTATTTGGCCTCAAAGGTGTTTAATGGCACCTTCACTACTACTAATGTCAAGTTTGCTGAAGTTGATCTCAATCGATGTGAGCCATGGGAACTTCCAGATGTGGCAAAGATGGGGGAGAGAGAGTGGTATCTGTTCAGTTTGAGGGACAAAAAATACCCAACTGGACTCAGAACAAACAGAGCAACTGGAGCAGGGTACTGGAAAGCCACTGGGAAAGACAAAGAAGTTTACAGTGCTAGTTCCAATGGAGAAAAGCTCTTACTTGGCATGAAGAAAACCCTTGTTTTCTACAAAGGCAGGGCCCCTCGTGGAGAGAAGACCAGATGGGTCATGCATGAGTACCGTTTGGATGGTCACTTCTCCATTTCCCACCATCACACAACTCTCATCTCTAAGGAGGAGTGGGTGATATGCAGAATATTTCACAAATCTGGGGAAAAGAAAGTCCAAGGACATTTGAATGCTGATTCTCCATCCCCCACGAAAAACACTACTACTTTACCACCTCCATTATCACTTGCAAAAACCCCAACTAATTCCTTAACATTGTGTCAATCCAAAACCTCATCACATCACCACAGCTTCCAAAATGATTCTGATCATCTTTTCCCATTCCAACCTGCTTGTTTTCCCTACACCAGAGATCACCATCCATCTTCTGAAGTATTCTTCAAGACTCAGCTATCTCAACAGGTCAAGGAGCAATTCACAACTCCAAAACGAACCAAAATGGAGACTACAACAGTACTCCATGATCAACAGCAATTATTAGAAGATGCTAATTATAATTATAACTTGCGCTGGATGGACAATAAGTTGAACTCAAATCCAAGTAATTTCCAGAACTTATTCCCTCTTGAGATCATGGATGCTACTGGCATGATGCTAGATGTTCCTATCGGAATGGATTCTTGGTCTCAGGCCCAGCATGTCTAA 1050 0.4286 MLAMEDVLCELSDHEKRNEQGLPPGFRFHPTDEELITFYLASKVFNGTFTTTNVKFAEVDLNRCEPWELPDVAKMGEREWYLFSLRDKKYPTGLRTNRATGAGYWKATGKDKEVYSASSNGEKLLLGMKKTLVFYKGRAPRGEKTRWVMHEYRLDGHFSISHHHTTLISKEEWVICRIFHKSGEKKVQGHLNADSPSPTKNTTTLPPPLSLAKTPTNSLTLCQSKTSSHHHSFQNDSDHLFPFQPACFPYTRDHHPSSEVFFKTQLSQQVKEQFTTPKRTKMETTTVLHDQQQLLEDANYNYNLRWMDNKLNSNPSNFQNLFPLEIMDATGMMLDVPIGMDSWSQAQHV* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2274 349 SUPERFAMILY NAC domain 17 181 IPR036093 GO:0003677|GO:0006355
Lja1g2274 349 Pfam No apical meristem (NAM) protein 23 154 IPR003441 GO:0003677|GO:0006355
Lja1g2274 349 MobiDBLite consensus disorder prediction 192 211 - -
Lja1g2274 349 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 12 299 - -
Lja1g2274 349 Gene3D NAC domain 31 186 IPR036093 GO:0003677|GO:0006355
Lja1g2274 349 ProSiteProfiles NAC domain profile. 22 181 IPR003441 GO:0003677|GO:0006355
Lja1g2274 349 MobiDBLite consensus disorder prediction 187 211 - -
Lja1g2274 349 PANTHER PROTEIN CUP-SHAPED COTYLEDON 3 12 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2274 Lja-Chr1 26486697 26494178 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2274 1 189 NAC Transcription Factor Family AT1G76420 71.429 2.16e-91 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja1g2274 NAM 6.9e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2274 - - lja:Lj1g3v3402230.1 522.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2274 1 26486697 26494178 Lja1g2274 1 26486697 26494178 ECH