Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2272 ATGTCTGAATCTGATATGGGTAGCAACAGAGATCATCACTCCACTCTTGAGTTCCAACTGCTGCAACCTCAGCCACAGCTCCAATTGGGGTTTCCTGCTCCACCCTCCAACTTCAACGGAGGAGATTTTGCTGCTGCTGCTGCTGCTGCTGCTGATGATGATGTTGTGATTGCTCTTCCTGCACCAGCCCCAGTTGGGTCTTCATCGGTGCCACCGGTGAAGAGGAAGAGGGGAAGGCCCAGGAAGTCGGCCGCCACCAACACCAACACCAACACCATCACCACCCTTGCCATTTTCCAGTCCGGTGGTCCTGTTACCCAGCCCGGTGAGGCCTCAGCTGGTGGTACTTCCGGGAAGAGGCCCAGAGGCAGACCTCGCGGTTCTCGCAACAAGAAACGCTCTGAATCAGAAGGAATTAACGTCACTCATGATGTTATTACTGTGAAACCAGGAGAGGACTTGGCGGCAAAAATCATGGACTTTTCCCTGAGTGCTCCAAGAGACATTTTCATTTTATCAGCAACTGGATCCTTATCCAAGGCTACAATTTGTCAATCTTCGTCATCTGGTGAAAGGGTGACATATGAGGGGCGATTTGAAATCCTTTCCCTTACTGGCACTTTTTCTGTTGCTGAAGATGGTAGGGAGGACAGTAGAGCTGGGGCATTAAGTATATCCTTTTCAGGGTCAGATGGCCAGGTTTTGGGAGGTGCTGTTGCAGGTCTATTAATAGCTGCTGCTTCTGTTAAGGTATTCTTAGGGAGTTACAAGTCTGTGAAGCAGACAGGTACTGCCCAACCAAGGTTTGCAACAGGTGGCCAAAGTAGCTCACCATCACTAGGCAGTGATTCGTCAGGTGGGCTTGGAAGCCTTAACTAG 879 0.5051 MSESDMGSNRDHHSTLEFQLLQPQPQLQLGFPAPPSNFNGGDFAAAAAAAADDDVVIALPAPAPVGSSSVPPVKRKRGRPRKSAATNTNTNTITTLAIFQSGGPVTQPGEASAGGTSGKRPRGRPRGSRNKKRSESEGINVTHDVITVKPGEDLAAKIMDFSLSAPRDIFILSATGSLSKATICQSSSSGERVTYEGRFEILSLTGTFSVAEDGREDSRAGALSISFSGSDGQVLGGAVAGLLIAAASVKVFLGSYKSVKQTGTAQPRFATGGQSSSPSLGSDSSGGLGSLN* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2272 292 Gene3D - 143 271 - -
Lja1g2272 292 Pfam Plants and Prokaryotes Conserved (PCC) domain 145 256 IPR005175 -
Lja1g2272 292 MobiDBLite consensus disorder prediction 83 113 - -
Lja1g2272 292 CDD DUF296 145 256 IPR005175 -
Lja1g2272 292 PRINTS High mobility group protein (HMGY) signature 108 127 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Lja1g2272 292 PRINTS High mobility group protein (HMGY) signature 72 84 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Lja1g2272 292 SUPERFAMILY AF0104/ALDC/Ptd012-like 143 260 - -
Lja1g2272 292 MobiDBLite consensus disorder prediction 61 138 - -
Lja1g2272 292 ProSitePatterns HMG-I and HMG-Y DNA-binding domain (A+T-hook). 116 127 IPR000637 GO:0006355
Lja1g2272 292 PRINTS AT-hook-like domain signature 74 84 IPR017956 GO:0003677
Lja1g2272 292 PRINTS AT-hook-like domain signature 117 128 IPR017956 GO:0003677
Lja1g2272 292 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 10 61 264 - -
Lja1g2272 292 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 61 264 IPR039605 GO:0003680
Lja1g2272 292 ProSiteProfiles PPC domain profile profile. 135 279 IPR005175 -
Lja1g2272 292 MobiDBLite consensus disorder prediction 264 292 - -
Lja1g2272 292 SMART AT_hook_2 119 131 IPR017956 GO:0003677
Lja1g2272 292 SMART AT_hook_2 74 86 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2272 Lja-Chr1 26472381 26475628 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2272 72 256 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 46.032 3.16e-44 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2272 - - lja:Lj1g3v3404290.1 413.69