Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lja1g2268 | ATGGCGTACCAGGCGATTCAGGGTTCGAGTTCAGGATCGAGTTCGGGGTTTCAAATGGTGAATTCTCCGTTCGGTGACACCACTTTCACCAAGGTCTTCGTTGGTGGATTGGCTTGGGAGACTCAGAGTGAAACCATGCGTCGTTACTTTGAGCAATTCGGGGAGATTCTTGAGGCGGTTGTGATCACTGATAAGAACACTGGGCGATCCAAAGGCTATGGTTTTGTGACTTTCCGGGATCCCGAGGCTGCAAGGAGAGCCTGTGCTGATCCAGCTCCTGTCATTGATGGTAGAAGGGCTAATTGTAACTTGGCTTCACTTGGTCGACCACGCCCACCTCTTCCCTATGGTCGGATAAGACCAGCCTCCCATTATGTTGGAAGTTTGCAACCAGCACGTGGTTCTTATGTTGGAGGTTTTGGCTACCAGCAGCAGCCACTTTCCTACGGCTATCAACAAGGATTGGTATATCCTCCTTATGGGTATACGACGTATGGACCTGAATACATCTACCCACAGAATGTGTACAACCCATATGTGGGTCAGCAGTACCTTCAGATATATGGAGTGCCTGGGGCAGTGAACACTACTGTTTATCCTTATGGACAATTGGGTCAGACTATTCCTAGTGGTCACGGTTATACAGCAATGCCAGGTTATACTGTACCAGCTCATCAGATTGTGCCGTACGGCGGATCCAGTGTTAATTCCATAACAACTTCACCTATGCCTGCCATTCAAGCATCATATCCTAGTGGAATAGCTTCACCAGTTCCAGGCCAACCCCAATTTATTGTTCCTGCTCCTTCTCAATTTATGCAAGGTGGTGGTCATGACCAAACAGCCGGGTGA | 852 | 0.4871 | MAYQAIQGSSSGSSSGFQMVNSPFGDTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACADPAPVIDGRRANCNLASLGRPRPPLPYGRIRPASHYVGSLQPARGSYVGGFGYQQQPLSYGYQQGLVYPPYGYTTYGPEYIYPQNVYNPYVGQQYLQIYGVPGAVNTTVYPYGQLGQTIPSGHGYTAMPGYTVPAHQIVPYGGSSVNSITTSPMPAIQASYPSGIASPVPGQPQFIVPAPSQFMQGGGHDQTAG* | 284 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lja1g2268 | 283 | PANTHER | RNA-BINDING PROTEIN 38-LIKE ISOFORM X1 | 1 | 279 | - | - | |
Lja1g2268 | 283 | SMART | rrm1_1 | 31 | 103 | IPR000504 | GO:0003723 | |
Lja1g2268 | 283 | Gene3D | - | 4 | 115 | IPR012677 | - | |
Lja1g2268 | 283 | SUPERFAMILY | RNA-binding domain, RBD | 8 | 118 | IPR035979 | GO:0003676 | |
Lja1g2268 | 283 | CDD | RRM_RBM24_RBM38_like | 30 | 105 | - | - | |
Lja1g2268 | 283 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 32 | 88 | IPR000504 | GO:0003723 | |
Lja1g2268 | 283 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 30 | 107 | IPR000504 | GO:0003723 | |
Lja1g2268 | 283 | PANTHER | BOULE-RELATED | 1 | 279 | IPR037366 | GO:0003729 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lja1g2268 | Lja-Chr1 | 26448330 | 26454261 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lja1g2268 | 19 | 163 | C2H2 Transcription Factor Family | AT2G19380 | 32.692 | 3.67e-17 | 79.3 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lja1g2268 | - | - | gmx:100779244 | 506.523 |