Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2268 ATGGCGTACCAGGCGATTCAGGGTTCGAGTTCAGGATCGAGTTCGGGGTTTCAAATGGTGAATTCTCCGTTCGGTGACACCACTTTCACCAAGGTCTTCGTTGGTGGATTGGCTTGGGAGACTCAGAGTGAAACCATGCGTCGTTACTTTGAGCAATTCGGGGAGATTCTTGAGGCGGTTGTGATCACTGATAAGAACACTGGGCGATCCAAAGGCTATGGTTTTGTGACTTTCCGGGATCCCGAGGCTGCAAGGAGAGCCTGTGCTGATCCAGCTCCTGTCATTGATGGTAGAAGGGCTAATTGTAACTTGGCTTCACTTGGTCGACCACGCCCACCTCTTCCCTATGGTCGGATAAGACCAGCCTCCCATTATGTTGGAAGTTTGCAACCAGCACGTGGTTCTTATGTTGGAGGTTTTGGCTACCAGCAGCAGCCACTTTCCTACGGCTATCAACAAGGATTGGTATATCCTCCTTATGGGTATACGACGTATGGACCTGAATACATCTACCCACAGAATGTGTACAACCCATATGTGGGTCAGCAGTACCTTCAGATATATGGAGTGCCTGGGGCAGTGAACACTACTGTTTATCCTTATGGACAATTGGGTCAGACTATTCCTAGTGGTCACGGTTATACAGCAATGCCAGGTTATACTGTACCAGCTCATCAGATTGTGCCGTACGGCGGATCCAGTGTTAATTCCATAACAACTTCACCTATGCCTGCCATTCAAGCATCATATCCTAGTGGAATAGCTTCACCAGTTCCAGGCCAACCCCAATTTATTGTTCCTGCTCCTTCTCAATTTATGCAAGGTGGTGGTCATGACCAAACAGCCGGGTGA 852 0.4871 MAYQAIQGSSSGSSSGFQMVNSPFGDTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACADPAPVIDGRRANCNLASLGRPRPPLPYGRIRPASHYVGSLQPARGSYVGGFGYQQQPLSYGYQQGLVYPPYGYTTYGPEYIYPQNVYNPYVGQQYLQIYGVPGAVNTTVYPYGQLGQTIPSGHGYTAMPGYTVPAHQIVPYGGSSVNSITTSPMPAIQASYPSGIASPVPGQPQFIVPAPSQFMQGGGHDQTAG* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2268 283 PANTHER RNA-BINDING PROTEIN 38-LIKE ISOFORM X1 1 279 - -
Lja1g2268 283 SMART rrm1_1 31 103 IPR000504 GO:0003723
Lja1g2268 283 Gene3D - 4 115 IPR012677 -
Lja1g2268 283 SUPERFAMILY RNA-binding domain, RBD 8 118 IPR035979 GO:0003676
Lja1g2268 283 CDD RRM_RBM24_RBM38_like 30 105 - -
Lja1g2268 283 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 32 88 IPR000504 GO:0003723
Lja1g2268 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 30 107 IPR000504 GO:0003723
Lja1g2268 283 PANTHER BOULE-RELATED 1 279 IPR037366 GO:0003729
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2268 Lja-Chr1 26448330 26454261 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2268 19 163 C2H2 Transcription Factor Family AT2G19380 32.692 3.67e-17 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2268 - - gmx:100779244 506.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2268 1 26448330 26454261 Lja1g2268 1 26448330 26454261 ECH