Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2265 ATGGCTGGTCACAACAACAATGAGAGACGCCAATCAGGGTGGTTCGGTGCTCCAAACCTCTTCATGACACCGGCACCGAATTTCCGCCTCCAACCACCACCCAACACCCACCATCATGACGATGGAGTCGGAAGTGGAAGTGGAGGTGGAGCAGTCTCCGGCGGACGCCGCCCTCGTGGTCGCCCTCCGGGGTCTAGGAACAAGCCGAAGTCACCGGTCATGGTCATGAGGGAAAACCCCCATGCGCTCCACGCGCATGTGCTGGAGGTTTCTTCGGGAGCCGACATCATGCAAACCCTCGTCGACTACACCCGTCGTCGTGCGTTGGGTGTTTGCATCCAAAGTGGCAGTGGGATGGTGTCGCATGTGACTCTCCACCAGCCTGGGGCTCCTCCGGGGACTGTGGTTACCCTACGTGGGCGGTTCCAAATCCTGTCCATATCAGGGACGGTGCTTCCACGCCCCCCAACAGTCGTGCTTCCGCGACCCCCAGTGCCTATGGATGCGATTGCAGAAGGGCTGTCAGTGTACCTATCTGGGGGACAGGGTTCGATAATTGGGGGAATTGTGGTGGCGCCTCTAATTACATGGGGTCCAGTGTTTTTAATGGCGGGTACGTTCTCCAACGCTGTGTTTGAAAGGTTGCCCTTGCCCTCAGAGGATCGACAACGACAACCACCCTCATCAACATCACATTCTTCTAGTGTCACATCAACGGGTCACATGGCAGAAGGTGGTGGCGGTGCTCCTTTTGTCAAAAGCAGGAACACTCCGATTTCCTCCTCCTCCTCCTCCGCAACCGTGCCTGGCAACAATCTATTTGGATGA 828 0.57 MAGHNNNERRQSGWFGAPNLFMTPAPNFRLQPPPNTHHHDDGVGSGSGGGAVSGGRRPRGRPPGSRNKPKSPVMVMRENPHALHAHVLEVSSGADIMQTLVDYTRRRALGVCIQSGSGMVSHVTLHQPGAPPGTVVTLRGRFQILSISGTVLPRPPTVVLPRPPVPMDAIAEGLSVYLSGGQGSIIGGIVVAPLITWGPVFLMAGTFSNAVFERLPLPSEDRQRQPPSSTSHSSSVTSTGHMAEGGGGAPFVKSRNTPISSSSSSATVPGNNLFG* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2265 275 MobiDBLite consensus disorder prediction 1 72 - -
Lja1g2265 275 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 29 39 254 - -
Lja1g2265 275 Pfam Plants and Prokaryotes Conserved (PCC) domain 85 209 IPR005175 -
Lja1g2265 275 Gene3D - 84 223 - -
Lja1g2265 275 MobiDBLite consensus disorder prediction 222 241 - -
Lja1g2265 275 SUPERFAMILY AF0104/ALDC/Ptd012-like 82 224 - -
Lja1g2265 275 MobiDBLite consensus disorder prediction 218 275 - -
Lja1g2265 275 MobiDBLite consensus disorder prediction 254 275 - -
Lja1g2265 275 ProSiteProfiles PPC domain profile profile. 78 228 IPR005175 -
Lja1g2265 275 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 39 254 IPR014476 GO:0003680
Lja1g2265 275 CDD DUF296 86 153 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2265 Lja-Chr1 26430017 26430996 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2265 53 217 AT-hook Motif Nuclear Localized (AHL) Family AT1G76500 56.647 4.45e-51 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2265 - - lja:Lj1g3v3404390.1 478.018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2265 1 26430017 26430996 Lja1g2265 1 26430017 26430996 ECH