Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2264 ATGGAGGGTGGTGAAAAACCGGTGGATAATATGGAAATTGTTGATGATGATACGACTTTGCTACCCCAGAATTCTGACAAGGATCAGAATGCGGGTTCCTCTCCTATGGTGCTTGCTCCCAATTCTCTTGCTCAGATACCAAAGGATGAAGTTATGGTTGATCAGGGGGATGATGATAACAGAATTGGGGATTCTACTCCGAATAACATGCTAGAAGTCAAAACAGGTAGTGAGAATCAGCTTGAGCTTGAAGATGTGAAAACGCCTTTGCATCAGGAATTGGTCACTCCAAAGTCCAGAGAAAGGAATGTCAGAGAAATGAAGAGCGTGCTAAACGATACTGAGGTGGTTGATTATGATGAGCCTGGTGCGTCTCTGGAGCGAGAAGCATTTATGAAAGAGCTCGAGAATTTCTACAGAGAAAGGTCCTTGGAATTTAAGCCTCCTAAGTTTTATGGAGAGCCACTAAATTGCCTGAAGTTATGGAGAGCTGTTATCAGACTTGGTGGCTATGATGTGGTAACTGGATCCAAGTTGTGGCGCCAAGTAGGAGAGTCTTTCCACCCCCCAAAGACTTGCACAACAGTCTCATGGACATTTAGAATCTTCTATGAGAAGGCACTTTTGGAGTATGAAAAGCATAAGAGAGAAATTGGGGAGTTACAGCTCCCTGTTGGAGTATTCCCTCAACCGTCAAGTGTGGAAAAAGAGACCACTGTTTATCAGGCTCCAGGCTCAGGTAGGGCGCGGAGGGATGCGGCAGCGCGTGCAATGCAAGGTTGGCATGCTCAGCGCCTTCTTGGTTACGGTGAGGTTGCTGAGCCAGTTATTAAGGATAAGAACTTCAACCCTACAACAAAGCGTGAAAAGAACCTCAAAAGTATTGGTGCGATCAATAAACAGAGGACACCGTCTGTTCTTGAGCATGTTGAAAAAGCTGCAAACATCGACGGAGATAGGCAGTTGGTCACAGCAGTAGTGGACGTTGGACCCCCAGCTGACTGGGTGAAGATCAACGTGCGGGAAACCAAAGATTGTTTTGAAGTGTATGCGCTAGTTCCTGGGCTCCTCCGTGAGGAGGTACGAGTCCAATCAGATCCAGTTGGACGTCTTGTTATAACTGGTATGCCAGAACATATTGACAACCCATGGGGAATCACCCCCTTCAAAAAGGTTGTGAACTTACCTGCAAGAATTGATCCCCTTCAAACATCTGCAGTTGTTAGTTTGCATGGTAGACTATTTGTTCGGGTTCCTTTTGAGCAGGGAGCCGTGTAA 1278 0.4617 MEGGEKPVDNMEIVDDDTTLLPQNSDKDQNAGSSPMVLAPNSLAQIPKDEVMVDQGDDDNRIGDSTPNNMLEVKTGSENQLELEDVKTPLHQELVTPKSRERNVREMKSVLNDTEVVDYDEPGASLEREAFMKELENFYRERSLEFKPPKFYGEPLNCLKLWRAVIRLGGYDVVTGSKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKREIGELQLPVGVFPQPSSVEKETTVYQAPGSGRARRDAAARAMQGWHAQRLLGYGEVAEPVIKDKNFNPTTKREKNLKSIGAINKQRTPSVLEHVEKAANIDGDRQLVTAVVDVGPPADWVKINVRETKDCFEVYALVPGLLREEVRVQSDPVGRLVITGMPEHIDNPWGITPFKKVVNLPARIDPLQTSAVVSLHGRLFVRVPFEQGAV* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2264 425 MobiDBLite consensus disorder prediction 1 47 - -
Lja1g2264 425 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 5 61 422 - -
Lja1g2264 425 Pfam ARID/BRIGHT DNA binding domain 127 212 IPR001606 GO:0003677
Lja1g2264 425 SMART ARID_2 122 212 - -
Lja1g2264 425 Gene3D - 126 223 IPR036431 GO:0003677
Lja1g2264 425 SUPERFAMILY HSP20-like chaperones 333 420 IPR008978 -
Lja1g2264 425 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 324 425 IPR002068 -
Lja1g2264 425 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 61 422 IPR045147 GO:0006357
Lja1g2264 425 MobiDBLite consensus disorder prediction 17 40 - -
Lja1g2264 425 CDD ARID 127 212 - -
Lja1g2264 425 CDD ACD_sHsps_p23-like 340 419 - -
Lja1g2264 425 SUPERFAMILY ARID-like 111 223 IPR036431 GO:0003677
Lja1g2264 425 ProSiteProfiles ARID domain profile. 125 216 IPR001606 GO:0003677
Lja1g2264 425 SMART bright_3 126 217 IPR001606 GO:0003677
Lja1g2264 425 Pfam Hsp20/alpha crystallin family 340 421 IPR002068 -
Lja1g2264 425 Gene3D - 323 424 IPR008978 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2264 Lja-Chr1 26414360 26421431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2264 14 422 ARID Transcription Factor Family AT1G76510 60.000 2.27e-158 452
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lja1g2264 ARID 4.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2264 - - adu:107461292 654.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2264 1 26414360 26421431 Lja1g2264 1 26414360 26421431 ECH