Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2257 ATGTCTTCAAATTCTTCGGATTCTCCTCCACCTGATTCATCTTCACAATCACCCCCTCCACCATCTGAAGAAGAATCATCGCCTCCTCCACCGTCGTCATCTCCGCCACCATCATCTCCTCCTCCGTCATCACCACCTCCATCATCGCCCCCGCCCTCATCACCCCCGCCATCCTCGCCTCCCCCGGATGATAAAAAATCTCCGCCCCCTCCATCAGGCTCTTCCCCATCTCCACCATCACCACCACCACCACCTTCTGACCAAAACTCACCCAACAACCCACCTTCTCCTCCGCCGCCATCACATTCCAGCGAACAGTTTTCTCCTCCTCCACCGTCACATCACCGGTTGTCTCCGGGTCACACTAAATCATCAGACTCCGGCACACCATCAGGGGACAACGGAAGCCAACTGAGCGTGCCGGCTATAATAGGAATTGCAACAGGGTTTGGATTGTTGCTCCTTGTCATTATCATAGCAGTCATTGTATGTTCAAGAAGAAAGAAGAGATCAGAAACTACAATACATTACTACTCTAACCATTCTGGTGACAAAGACTACTACAAATCAGGTCCAAATCAGTACGGTTACAATAACGGTGAGCATGTTCTTAACATTCCTCCACCACCAGGTGTAGGATGGGGAGCACACGCGCCTCCGCATCCCCCGCCACAGCGTGTTAGTAGTGACATGAGCAACTCCAGTAACTCAGGTCCCCATGGTCCTGTACTGCCACCGCCACACCCTACGGTGGCCTTGGGGTTCAACCAGAGCACTTTCACGTATGAAGAGTTATCCACAGCCACCGGTGGTTTCTCCCAACGCAACTTGCTAGGTCAAGGTGGTTTTGGATATGTGCACAAAGGTGTTCTTCCAAATGGTAAGGAAATAGCTGTGAAGAGCCTCAAATCCACTGGGGGACAAGGAGACAGAGAGTTCCAAGCTGAGATTGATATAATTAGTCGTGTTCATCATCGCCATCTTGTGTCACTTGTTGGGTATTGCTTTACTGAGAGCAAAAAGTTGTTGGTGTATGAATTTGTGCCTAATAAGACTCTTGATTACCACCTTCATGGAAAGGGTCGACCTGTGATGGACTGGGACACCAGACTTAGAATTGCCATTGGATCAGCCAAAGGGCTTGCTTACTTACATGAGGATTGTCACCCTCGTATCATTCACCGAGACATAAAGGGTGCAAACATTCTAATTGAAAACAACTTTGATGCCAAAGTTGCAGATTTTGGATTGGCAAAGTTTAATCAAGACACTAACACACATGTTTCTACTCGTGTGATGGGAACATTTGGGTATTTGGCTCCTGAGTATGCATCAAGTGGCAAGCTAACTGAGAAATCTGATGTTTTCTCATTTGGTATTATGCTATTAGAGCTCATTACAGGACGACGACCGGTAGACAACACTGGTGATTATGAAGAGGATAGTTTGGTTGATTGGGCTAAACCACTATGTGCAAAAGCAATGGAAGAGGGGATTTTTGTTGGACTGGTGGATCCACGTTTAGAAGACAATTATAACAAACAAGAGATGGCACATATGATTGCTTGTGCTGCTGCTAGCGTTAGACACTCAGCAAGAAGACGCCCGAGAATGAGCCAGATTGTACGAGTGCTGGAGGGAGATGCCTTAGTGGATGTCCTTAATCATGACGGAGTGAAACCTGGCCAGAGTGCAATGTTTAGCAACGCAAGCGGCGAGTATGATGCTGGTGCGTATAGTGCTGACATGAAGAAGTTCAGGAAACTAGCATTTGATAGCGGCACCCCCGCGAGCAGCGAGTTTGGCGCAACGAGTGAGTATGGCCTCAACCTCTCCGCCTCGAGCAGCGATCAATCAACTACTGAGATTGGCAGGAGGACAGGAAGTCGGCTGCAAACTCCTTGA 1905 0.484 MSSNSSDSPPPDSSSQSPPPPSEEESSPPPPSSSPPPSSPPPSSPPPSSPPPSSPPPSSPPPDDKKSPPPPSGSSPSPPSPPPPPSDQNSPNNPPSPPPPSHSSEQFSPPPPSHHRLSPGHTKSSDSGTPSGDNGSQLSVPAIIGIATGFGLLLLVIIIAVIVCSRRKKRSETTIHYYSNHSGDKDYYKSGPNQYGYNNGEHVLNIPPPPGVGWGAHAPPHPPPQRVSSDMSNSSNSGPHGPVLPPPHPTVALGFNQSTFTYEELSTATGGFSQRNLLGQGGFGYVHKGVLPNGKEIAVKSLKSTGGQGDREFQAEIDIISRVHHRHLVSLVGYCFTESKKLLVYEFVPNKTLDYHLHGKGRPVMDWDTRLRIAIGSAKGLAYLHEDCHPRIIHRDIKGANILIENNFDAKVADFGLAKFNQDTNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGIMLLELITGRRPVDNTGDYEEDSLVDWAKPLCAKAMEEGIFVGLVDPRLEDNYNKQEMAHMIACAAASVRHSARRRPRMSQIVRVLEGDALVDVLNHDGVKPGQSAMFSNASGEYDAGAYSADMKKFRKLAFDSGTPASSEFGATSEYGLNLSASSSDQSTTEIGRRTGSRLQTP* 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2257 634 SUPERFAMILY Protein kinase-like (PK-like) 252 545 IPR011009 -
Lja1g2257 634 Gene3D Phosphorylase Kinase; domain 1 249 347 - -
Lja1g2257 634 ProSitePatterns Serine/Threonine protein kinases active-site signature. 392 404 IPR008271 GO:0004672|GO:0006468
Lja1g2257 634 MobiDBLite consensus disorder prediction 212 246 - -
Lja1g2257 634 MobiDBLite consensus disorder prediction 212 226 - -
Lja1g2257 634 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK5 4 596 - -
Lja1g2257 634 ProSitePatterns Protein kinases ATP-binding region signature. 278 300 IPR017441 GO:0005524
Lja1g2257 634 ProSiteProfiles Protein kinase domain profile. 272 551 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2257 634 MobiDBLite consensus disorder prediction 12 116 - -
Lja1g2257 634 Gene3D Transferase(Phosphotransferase) domain 1 348 554 - -
Lja1g2257 634 Pfam Protein tyrosine and serine/threonine kinase 275 543 IPR001245 GO:0004672|GO:0006468
Lja1g2257 634 MobiDBLite consensus disorder prediction 1 134 - -
Lja1g2257 634 MobiDBLite consensus disorder prediction 610 634 - -
Lja1g2257 634 SMART serkin_6 272 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2257 634 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 4 596 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2257 Lja-Chr1 26297052 26300065 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2257 82 625 Trihelix Transcription Factor Family AT1G70460 48.909 2.33e-156 465
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Lja1g2257 PK_Tyr_Ser-Thr 2.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2257 - - gmx:100806299 769.229