Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2252 ATGGCAGCCTCCGCCAACTCCCCCGGCGGTGCTCTGCCGGAGCTAACCAACCGCACTCCATTTCTAGGCCTCAAACTCTACCTCCTGATCCTCATTCTCCTCTTGATCGTGGTTACGACCTTGCTCATCGTCTTCCTCTGCGCTCGCCGGAGCCGGAGCTCCGAGAAGGGCCAAATGCGGGTGAAGCACAGCTCCGGCACAATCCCGCTCGTCTCGAAGGAGATCGTGGAGGTGCTCAGAATTGAACACGTGGACGACGATCCGAAGAAGGTGGAGATCGAAGAGAGCGGTGGTGGTGCGCCGGTGGAGTCTCCGTCGGCGAACATAGGATGGGGCCGGTGGTATAGCCTGAAGGAGCTGGAGATGGCAACTGATGGCTTTGCAGAAGGGAATGTGATCGGAGAAGGAGGGTATGGGATTGTATTCAGAGGAATTCTGCAGGACGGTTCTGTGGTTGCTGTGAAGAATCTTATCAACAACAACAAGGGTCAAGCAGAGAAAGAATTTAAGGTGGAGGTTGAAGCCATTGGAAAAGTGAGGCATAAGAATTTGGTGGGGTTAGTTGGATATTGTGCAGAAGGTGCTCAAAGGATGCTTGTTTATGAATATGTTGACAATGGAAATTTGGAGCAGTGGCTGCATGGTGATGTAGGGCAGGTTAGCCCCTTGTCGTGGGATTTACGAATGAAGATTGCTGTTGGAACTGCAAAAGGACTAGCCCACTTGCACGAAGGCTTAGAACCCAAAGTTGTCCATCGAGATGTAAAATCAAGTAATATTCTTTTGGACAAAATGTGGAATGCCAAAGTATCAGACTTTGGACTGGCCAAGCTCTTAGGACCTGAGAAAAGCTATGTGACAACGCGTGTAATGGGGACATTTGGATATGTTTCACCTGAGTATGCAAGCACGGGCATGCTTAATGAGGGCAGTGATGTGTATAGTTTTGGTATTCTACTTATGGAACTAATTACAGGAAGAAGTCCCATTGATTATTCTAGACCAGCTGGAGAGATGAGCTTGGTTGATTGGTTTAAGGGAATGGTAGGAAGTCGTCGCGGTGATGAGCTAGTTGATCCTTTAATTCAGATTCAACCCTCTCCAAGATCTCTGAAACGAGCTTTACTGGTTTGTCTGCGCTGTATAGATTTGGATGCTTGTAAGCGACCAAAGATGGGTCAAATTGTTCATATGCTTGAGGCGGATGATTTTCCCTTTCGTTCTGAACGTCGAACAAATAGAGAGAAAGATGATGTTCCCTCTCAAGCAGCTGTTTCTAGTAAGGTCCCATATCCAAAAAGGCATGTGGAGCCCATATCATGGAGATGA 1329 0.4808 MAASANSPGGALPELTNRTPFLGLKLYLLILILLLIVVTTLLIVFLCARRSRSSEKGQMRVKHSSGTIPLVSKEIVEVLRIEHVDDDPKKVEIEESGGGAPVESPSANIGWGRWYSLKELEMATDGFAEGNVIGEGGYGIVFRGILQDGSVVAVKNLINNNKGQAEKEFKVEVEAIGKVRHKNLVGLVGYCAEGAQRMLVYEYVDNGNLEQWLHGDVGQVSPLSWDLRMKIAVGTAKGLAHLHEGLEPKVVHRDVKSSNILLDKMWNAKVSDFGLAKLLGPEKSYVTTRVMGTFGYVSPEYASTGMLNEGSDVYSFGILLMELITGRSPIDYSRPAGEMSLVDWFKGMVGSRRGDELVDPLIQIQPSPRSLKRALLVCLRCIDLDACKRPKMGQIVHMLEADDFPFRSERRTNREKDDVPSQAAVSSKVPYPKRHVEPISWR* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2252 442 CDD STKc_IRAK 133 400 - -
Lja1g2252 442 PANTHER OS03G0227900 PROTEIN 105 416 - -
Lja1g2252 442 ProSiteProfiles Protein kinase domain profile. 127 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2252 442 MobiDBLite consensus disorder prediction 409 442 - -
Lja1g2252 442 PANTHER OS03G0227900 PROTEIN 15 83 - -
Lja1g2252 442 SUPERFAMILY Protein kinase-like (PK-like) 105 400 IPR011009 -
Lja1g2252 442 Pfam Protein kinase domain 129 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2252 442 ProSitePatterns Protein kinases ATP-binding region signature. 133 155 IPR017441 GO:0005524
Lja1g2252 442 PANTHER OS01G0323000 PROTEIN 105 416 - -
Lja1g2252 442 PANTHER OS01G0323000 PROTEIN 15 83 - -
Lja1g2252 442 Gene3D Phosphorylase Kinase; domain 1 101 203 - -
Lja1g2252 442 Gene3D Transferase(Phosphotransferase) domain 1 204 416 - -
Lja1g2252 442 ProSitePatterns Serine/Threonine protein kinases active-site signature. 250 262 IPR008271 GO:0004672|GO:0006468
Lja1g2252 442 SMART serkin_6 127 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2252 Lja-Chr1 26258745 26262810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2252 4 400 Receptor kinase-like Gene Family AT4G02010 41.791 5.29e-91 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Lja1g2252 Pkinase 9.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2252 - - gmx:100779420 695.271