Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2245 ATGATACTTGCTGTGGACTTGAATGCCTTGCCTGTGCCGGAGGAAGATGAAGATTCTATTGAGGGCCATGTTCAAGAGCCAATAGAAACTGCATTAGATATAGTACAAGAATGTGAAGAAAGTAAGAGACGATTGAAGAGAGAACGTTCAGATTACAGACCTGTGCAAGCATCACAGTCACCTGGACATGATCAGCCATTCCATTCAAAGATCCATAAATCCTATGATAGAAGTAAGCTTCCCCCAGGTTGGTTGGATTGCCCTCCATTTGGCCTGGAAATTTTTTGCATGATACCTTCTAAGGTTCCTCTTGGTGAATCATTCAATGAATATATTGTTCCTGGTAAAAGATACTCATTTAAACAAGTGATACATCAACAGAGAGTTTTAGGGAGAAAACTTGGTCTGGTGATTGATTTGACGAATACTTCTAGATACTATCCAGTATCAGATCTAAAGAAAGAGGGTATCAAACATGTTAAGATTCAATGCAAGGGCCGCGGTTCTGTACCTGATAATTTATCTGTTAATCATTTTGTCTATGAGGTTACCCAATTTCTGTCGCGTCAAAAACTGTCAAAAAAGTTTATACTTGTTCATTGTACACATGGTCACAATCGAACAGGATACATGATCATTCATTATCTAATGCGCACAATGTCAATATCGGTTACTCAGGCAATAAAAATATTTTCTGATGCACGCCCTCCTGGAATCTATAAACCAGAGTATATTGATTCCTTATACACATTTTATCATGAAAAAAGGCCTGAAATGATAGTTTGTCCTCCTACCCCGGAGTGGAAGAGAACTCTTGAACGTGTTGATCTCAATGGTGAAGCAGTTCCAGATGATGATAATGATGATGATGATGATTATGATGGAATGGCGGCCTCTCCTTTGCATGAGAACCATGAGGCCGACACAATAATGACAAATGATGATGTTTTGGGAGATGAGATACCTACTGATCAGCAAGATGCATTTCGACAGTTTTGCTTTAAAACGCTTAAATTGGGTGTTGGGGCTAGAGGACAAATGCATTTTCCTGGGTCGCACCCTGTTTCTCTAAACAGGGATAATTTACAGCTGTTACGACAGCGTTATTATTATGCTACGTGGAAAGCCGATGGAACAAGATATATGATGCTCATAACTATGGATGGATGTTACTTGATTGATAGAAACTTTAATTTTCGAAGGGTCCAAATGAGGTTTCCTTGCAGGGTTAAAAATGATGGCTTGCCAGAGAAAACTCACCACTTCACATTACTTGATGGGGAGATGATTATTGATACAGTACCAGATTCAAGAAAGCAGGAAAGGAGATACCTCATTTATGATCTGATGGCAGTCAACCGTGCATCAGTAATAGAGCGACCTTTCTACGAACGGTGGAAGATGCTAGAGAAGGAAGTAATTGACCCCAGGAATCAGGAACGGTTCCAGAGCAAAAATGCATATTACAGATATGACATGGAGCCCTTCAGGGTGAGGAGGAAAGATTTTTGGCTGCTCTCTACTGTCACAAAACTTCTAAAAGAATTCATTCCGAAACTCTCACATGATGCGGATGGTCTTGTATTTCAGGGTTGGGACGATCCTTATATACCACGCACTCATGAAGGCCTCTTAAAGTGGAAGTATGCTGATCTGAATTCAGTTGATTTTCTTTTTGAGATTGTCGATGGTCGTCAACTACTTTTTCTCTATGAACGAGGAAAAAGGAAACTCATGGAAGGGTGTGGGGTTGCATTCGAAGAAGGTTCAGACCCCTTGCTGTATTCTGAAAAGATCATAGAGTGTTCTTGGGATTCTGACAAACAGAAATGGATATTCAAACGAGTCAGAACAGATAAGTCAACTCCAAATGACTTTAATACATACAAGAAGGTGATGCAAAGTATAAAAGACAATATCACAGAGGATATCCTGTTGAATGAAATAAACGAGATAATTCGCCTTCCCATGTATGCTGACAGGATAAAAATTGACAGCAAAGCCACTAATATGAAGCGAAGGTAA 2025 0.397 MILAVDLNALPVPEEDEDSIEGHVQEPIETALDIVQECEESKRRLKRERSDYRPVQASQSPGHDQPFHSKIHKSYDRSKLPPGWLDCPPFGLEIFCMIPSKVPLGESFNEYIVPGKRYSFKQVIHQQRVLGRKLGLVIDLTNTSRYYPVSDLKKEGIKHVKIQCKGRGSVPDNLSVNHFVYEVTQFLSRQKLSKKFILVHCTHGHNRTGYMIIHYLMRTMSISVTQAIKIFSDARPPGIYKPEYIDSLYTFYHEKRPEMIVCPPTPEWKRTLERVDLNGEAVPDDDNDDDDDYDGMAASPLHENHEADTIMTNDDVLGDEIPTDQQDAFRQFCFKTLKLGVGARGQMHFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITMDGCYLIDRNFNFRRVQMRFPCRVKNDGLPEKTHHFTLLDGEMIIDTVPDSRKQERRYLIYDLMAVNRASVIERPFYERWKMLEKEVIDPRNQERFQSKNAYYRYDMEPFRVRRKDFWLLSTVTKLLKEFIPKLSHDADGLVFQGWDDPYIPRTHEGLLKWKYADLNSVDFLFEIVDGRQLLFLYERGKRKLMEGCGVAFEEGSDPLLYSEKIIECSWDSDKQKWIFKRVRTDKSTPNDFNTYKKVMQSIKDNITEDILLNEINEIIRLPMYADRIKIDSKATNMKRR* 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2245 674 Gene3D Protein tyrosine phosphatase superfamily 56 274 IPR029021 -
Lja1g2245 674 ProSiteProfiles ATP-dependent DNA ligase family profile. 444 576 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Lja1g2245 674 MobiDBLite consensus disorder prediction 41 77 - -
Lja1g2245 674 Gene3D - 586 661 IPR012340 -
Lja1g2245 674 Pfam mRNA capping enzyme, C-terminal domain 594 645 IPR013846 -
Lja1g2245 674 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 313 549 - -
Lja1g2245 674 Pfam Dual specificity phosphatase, catalytic domain 132 252 IPR000340 GO:0008138|GO:0016311
Lja1g2245 674 Gene3D DNA ligase/mRNA capping enzyme 312 548 - -
Lja1g2245 674 SUPERFAMILY Nucleic acid-binding proteins 551 662 IPR012340 -
Lja1g2245 674 PIRSF mRNA_capping_HCE 67 674 IPR017074 GO:0004484|GO:0006370|GO:0140818
Lja1g2245 674 ProSitePatterns Tyrosine specific protein phosphatases active site. 199 209 IPR016130 GO:0016311|GO:0016791
Lja1g2245 674 Pfam mRNA capping enzyme, catalytic domain 353 548 IPR001339 GO:0004484|GO:0005524|GO:0006370
Lja1g2245 674 CDD Adenylation_mRNA_capping 349 549 IPR001339 GO:0004484|GO:0005524|GO:0006370
Lja1g2245 674 SMART dsp_5 139 254 IPR020422 GO:0006470|GO:0008138
Lja1g2245 674 Coils Coil 28 48 - -
Lja1g2245 674 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 79 269 IPR029021 -
Lja1g2245 674 PANTHER MRNA-CAPPING ENZYME 3 674 - -
Lja1g2245 674 CDD RNA_5'-triphosphatase 83 249 - -
Lja1g2245 674 ProSiteProfiles Dual specificity protein phosphatase domain profile. 102 258 IPR020422 GO:0006470|GO:0008138
Lja1g2245 674 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 177 246 IPR000387 GO:0016311|GO:0016791
Lja1g2245 674 PANTHER MRNA (GUANINE-N(7)-)-METHYLTRANSFERASE-RELATED 3 674 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2245 Lja-Chr1 26137720 26147267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2245 1 669 Protein tyrosine phosphatase (PTP) family AT3G09100 64.853 0.0 901
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2245 K13917 - gmx:100803597 1164.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2245 1 26137720 26147267 Lja1g2245 1 26137720 26147267 ECH