Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2241 ATGTTTCTGGTGAAACGCTTGCCGAGTATAGACGGTTCCGGATTGAGTTTTCCAGTGGGAATGCGTGTTCTTGCTGTTGACAACAACCAAACAAGTCTCAACCTACTGGAGGAAATGCTTCACGAATGCCATTACAAAGTTACTACTACCACTCAGTCAACTCTGGCTCTAGAAATCTTGAGGAATCACAGAAATAACTTTGACCTTGTTATTTGTGAAGTAAATATGCCAGACATTGATGGATTTCAGCTCCTTCAGCAAGTGGTTGAGATGAATTTCCCTGTTGTCATGTTGTCAGAAAACAGTGATGAAGAGCTTGTGCGGAAGAGTATTGTCCATGGCGCATGTGCCTATCTATTGAAACCTGTTCGCATTGAAGAGTTGAGGAACATATGGCAACATGTAGTCCGGAGGAACATTAATTGCAGTGATCAGAATAAGACTATCAATAAGGAAAACATCTCTAATATGGCTGGGAAAGGAGCTCAAGTCACCATGGTACCAGAAAATTGGAAGAAAGTTGATTGCAATGATCGGAATAAGGCTCTAAATGATGAGGGGAAAATCTGTAATGTGGCTGGAGAAGTTACTAAAGGCATGGTACCAGAAAATAATGATGTTCAAAATAAAATTTTGGGTAAGAAAAGGAAAGAGCAAAGTGATAAGAATGAGGAACTTTCATCCGGAACCAAGCCTCGTCTAGTTTGGACTGCCGAGTTGCAAACACGTTTTCTTGCTGCAATTAGTCAATTGGGCCTTGACAAGGCTAAACCTAAGAGAATACTTGAGTTGATGAATGTTGAAGGGCTTTTGATTACACATGTAACCAGTCATTTGCAGAAGTACAAGCTCAATCTAGAAAAGGCAACAAAGCAAGCTAGAGCAAGTATGGCTCCTGCATCTGACTTGAGTGGTTCTTCTTCACTGGTTCAGCCTATTAAGTCTCTACAAAAACATGACAGTCCACCTTTCAAATGCGATGTGAATCAAACCACAGGTGAATCTCAATCATCCGAATTTCCAGCCATTTCTTCCACAAGTACTGTTGCTGGTCCCTTGCAGGATGCTGAGATGTAA 1077 0.4123 MFLVKRLPSIDGSGLSFPVGMRVLAVDNNQTSLNLLEEMLHECHYKVTTTTQSTLALEILRNHRNNFDLVICEVNMPDIDGFQLLQQVVEMNFPVVMLSENSDEELVRKSIVHGACAYLLKPVRIEELRNIWQHVVRRNINCSDQNKTINKENISNMAGKGAQVTMVPENWKKVDCNDRNKALNDEGKICNVAGEVTKGMVPENNDVQNKILGKKRKEQSDKNEELSSGTKPRLVWTAELQTRFLAAISQLGLDKAKPKRILELMNVEGLLITHVTSHLQKYKLNLEKATKQARASMAPASDLSGSSSLVQPIKSLQKHDSPPFKCDVNQTTGESQSSEFPAISSTSTVAGPLQDAEM* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2241 358 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 306 IPR045279 GO:0009736
Lja1g2241 358 ProSiteProfiles Response regulatory domain profile. 22 136 IPR001789 GO:0000160
Lja1g2241 358 SMART REC_2 21 132 IPR001789 GO:0000160
Lja1g2241 358 SUPERFAMILY CheY-like 20 140 IPR011006 -
Lja1g2241 358 Pfam Response regulator receiver domain 23 131 IPR001789 GO:0000160
Lja1g2241 358 MobiDBLite consensus disorder prediction 315 358 - -
Lja1g2241 358 Gene3D - 229 289 - -
Lja1g2241 358 Gene3D - 21 189 - -
Lja1g2241 358 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 231 284 IPR006447 GO:0003677
Lja1g2241 358 CDD REC_typeB_ARR-like 23 136 - -
Lja1g2241 358 MobiDBLite consensus disorder prediction 204 230 - -
Lja1g2241 358 MobiDBLite consensus disorder prediction 324 352 - -
Lja1g2241 358 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 306 - -
Lja1g2241 358 MobiDBLite consensus disorder prediction 209 228 - -
Lja1g2241 358 SUPERFAMILY Homeodomain-like 230 288 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2241 Lja-Chr1 26101430 26104237 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2241 17 323 Response Regulator Gene Family AT2G25180 42.154 3.06e-70 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lja1g2241 Response_reg 1.5e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2241 - K14491 gmx:100803040 283.493