Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2238 ATGGCTTCTTCATCTGCTTGTTCTTCATCATATTCCAAATCTCCATCGTTTAATTCCAATTCCAATTCGCGATACGATGTGTTCTTGAGTTTCAAGTTGGAATTTGATGATGAAGCCACCTCTTTCGTCGACGCGCTCAGCGTCTCTCTGACCAGAGATGGCTTCGAAGTTTTCGAGCACGGCGGGTGTTTAGGTCAGGAGGGAATCTTCACACCCTCAACTTTGCTTGCAATCCAGAACTCAAGGATCTGTGTCGTTGTTCTCACAAAAAGCTACCTAAAATGTGTAAGATGTGTCCAAATGCTGGAGAAGATCATGCTGTTGATTCAGGAAACTGCGCAAAGTAAGATACTGCCTCTGTTCTATGATATTGATGTGCATGGGGAAGGTTTTGGATATGTGTCTCCACTGCCTAAAGTCATTCCTGAGGATTCAGTATTGAGTAGAAACCTTGCTGAAGCTGCACAAATTCTTGGCTGGAATTTCTCAGCTTTGACTTCACGAAGTGAAGCAAAGGTGATTGAGGATATCAAGGACTACATTTTCAAAGTTTTAATCCCATTTGGGCATGGGTATGTTTCAGCCAATCTCGTCAGAGAAAAATCTGTGCAAGATGTGATTAAATTGTTAAATGACGGGTCAAATTGTCCACTCATTGTTGAAATCTGCGGAGAGGGTGGAATTGGTAAAACAACTATAGCAAAAACTGTTTATAAGGAAATTGGTGATCTTTTTGAGGGAAAAAGTTTCCTTGCAAATATCAAGGAAGTCTGGGAGCAAGATGTTGGTCAAGTTTATTTACAAGAACAGTTTCTTTCAGACATCTTTGAGACAAAAAATTTGAAAATGCAGAGCATTGAAGAGAGAGAATCCATAATGAAGGAAATGCTTAAGAATAGGAGGATACTTCTTGTCCTTGATGATGTTAGTGATTTGGATCAAACAAATGTTTTGTGTGGAAATGGTAACTGGTTAGGTCCAGGAAGTAGAATAATGATTACAACCAGAGCCCGGCATCCAGTTTCTAAAGTAGCAGACCGAATATATGAAGTGAGGCCATTGGATATTCTTGAAGCCTATCGGCTTTTCTCATGGCATGCATTTAAAAAAGTAAGATTTGTATCAAAGATGGAAAATTTGCCAGTAAGTATTGTCAATATGTCAAAAGGGTTGCCACTTGTTGTTGAAGTTCTTGGCTCTTATTTGTACAGAAGGGCAGAACCAATATGGGAAAATGTAGTATCAAGATTGAAACAAGCCGGTCCTAACATCACTACATTGGAACTTCTCAAAATAAGCTATGATGATTTAGATGCATTGGAGAAAGATGTGTTCTTTGATATTTCTTGTTTCTTTATTGGTAAAGATAGAAACTTCGTTACACAAACATTAAATGACTCTGGCATTTTTGCTGAAACTGTAATAAATGTCCTCATAGAGCGGAAACTTGTGACTGTCGATGAGAATAACAAGCTTCAGATGCATGATTTGTTGAAAGAAATGGGAAGAGGAATTATTGTTAAAAAGCCAAAAAGCAAATGGAGCTATGATGTATTCTTGAGTTTCAGAGGAGAGGAATCTCGTAGATCTTTCACTTCTCATCTCTATACAGCATTGAAAAATGCTGGTATCAAGGTTTTCATGGACAACGAGCTTCAAAGGGGAGAAGATATTTCATCCTCACTATTAAAAGCAATTGAAGATTCTAGAATTGCTATTATTATTTTCTCAACAAATTACACGGGTTCTAAGTGGTGTCTGGATGAACTGGAGAAAATCATTGAGTGCCAAAGAACTATTGGTCAAGAAGTAATGCCAGTATTCTATAATGTGGACCCATCCGACATACGCAAGCAAAGGGGAACTGTGGGAGAAGCATTCAGAAAACTTATAAGCGGGATCTCAGTTAGCAAACAGAAGGTTTCTAGTTGGCGGACAGCACTCACAAGAGCTGCAAATTTTTCTGGATGGGATTCGAGAAATTATGGAACTGAAGTTGAGTTGATTGATTGTATTATTGAGACTATTGCCAAGAAAGTAGACGGCAACACTTACTTATTCATTGCTAACCATCCTGTGGGGGTAATGTCTCGTGTTCAAGATGTAATAGACATGCTCTCATCCTTAAAAAGCAATTCAGATGATGCTCTCATAGTAGGGATCTGGGGAATGAGTGGGGTTGGTAAAACAACCTTAGCCAAAGCCATTTACAATAAACTTGGCTGCCAATTTGAGGGTAAAAGTTTTTTGGCAAACATCAAGGAGGTTTGGGAGCATAACTATGGCCAGGTCTATTTGCAAGAACAGCTTCTTTCGGATGTTTTGAAAAGAAGAAGGCTTAATCTGCATAGTATTGAACTGGGGAAAACAGTAATAAAGGAGAGCTTTCACCAGAAAAAGACACTTGTTGTGCTTGATGACGTGAATAAGTTGGAGCAGCTACATGCTTTGTGTGGAAGTAGTGAATGGTTTGGTCCGGGGAGTTCAATAATCATCACAACTCAAGATGAACATCTACTCAATGTTCTTAAAGTGGATGCTGTTTATAGAATAAAAATATTGGGTAAAAGTGAATCTCTTGAGTTGTTCAGTTGGCATGCTTTTAAGCAAGCAATTCCTCCAGAAGAGTACACTGATCTCTCAGACCATTTAGTTTATTATTCTGGGGGACTCCCATTAGCTCTTGAAGTTCTGGGTTCTTATTTGTTTGACAGGCCAAAGTCTGATTGGAAAAGTGTATTACGAAAACTTCAAAAACTTCCCAATGATCAAATACAAAAGAAGCTTAAACTATGCTTTGATGGTTTGAATGATGATATGGAGAAGGACATATTCCTTGACATATGCTGTTTCTTTATTGGGAAGGACAGACACTATGTTACAGAAATATTAAATGGCTGTGGACTTGATGCAGAAATTGGAATAAGCACCCTCATAGAACGGAGTCTCATTACTGTTGATAACAAAAACAAGCTTCAAATGCATAACTTGATACGAGACATGGGACGAGAAGTCATTCGTGAAGAATCACCGAAATATCCTGAAAAACGTAGTAGATTATGGTTTCATGGGGATGTGGTGGATCTTCTAAGGAAGCAAATTGGAACAAAAGCTATTGAGGGACTCGCTTTGAAGTTTCCAAATACTAATAAAATTCCTATCAACACTGAAGCATTTGAGAAGATGAGGAGACTCAGGTTGCTTCAACTTGATCATGTGGAACTCGACGGAGATTATAAGTATCTTCCGAAAGATCTAAAGTGGCTTTGTTGGCATGGGTTTCCTTTAGGAGACATACCTGATGACTTTGAACAGAGAAATTTAGTTGCTATTGACTTAAAGTACAGCAAACTCATACAAGTTTGGAAGAAGCCCCAGCTGCTAGAGAAGTTGAAAATCCTCAATCTTGGTCATTCTCGATGCTTGACACAAACTCCTGACTTCTCAAACCTTCCAAATCTTGAAAGGCTTATACTCAAAGATTGTCCAAGTTTGTCTATGATTCATGAAACCATTGGAAGTCTAGGCAAACTTCTTTTGGTTAATTTAAAGGATTGTAAAAAACTTAACAGTCTACCAAGAAGTATCTATAAGTTGAAATCTTTGAAAACCCTCATTCTTTCTGGCTGTTCAATGATTGATAAGTTGGAAGAGGACATAGAGCAGATGGAATCATTGACAACTCCAATGGCAATTGACACGGCCATATCACAAGTCCCCTCCTCATTGTTGAGACTGAAAAACATAGGATACATTTCTCTATGTGGCCACGAAGGATTACCATGTGATGTATTTCCCTATCTCATTTGGTCATGGATGTCACCAGTGAACAATCTCCAGTCCCTTACCCAAGCATCTGGAGCCATGCCATCTTTTATTTCCTCAGACATAATGGATAATACATGTCATGGTATATTATCTATTCTTAGCAGCCATCCAAATCTTCGAAGTCTTCAGTTGCAATGCAAATCAATTAATCATATACAACAAGAGAAGAGAAGAGTTTTGGATGCGTTGTCTGTTGCAGATTGTACTGAATTGGAAACATTTCCAAGTGCATCGAGAACTTTAGAAATGGGAACTTCTATATTAAGAAACCAAGACAATCATGTTCACATTTCAGGGTTAAAGACTTCGTCAGGTAGTCTTTGGATATATATGGGAGAGCACAGTCATAGAGATATCATTTTGCAGGTCAAATAG 4203 0.384 MASSSACSSSYSKSPSFNSNSNSRYDVFLSFKLEFDDEATSFVDALSVSLTRDGFEVFEHGGCLGQEGIFTPSTLLAIQNSRICVVVLTKSYLKCVRCVQMLEKIMLLIQETAQSKILPLFYDIDVHGEGFGYVSPLPKVIPEDSVLSRNLAEAAQILGWNFSALTSRSEAKVIEDIKDYIFKVLIPFGHGYVSANLVREKSVQDVIKLLNDGSNCPLIVEICGEGGIGKTTIAKTVYKEIGDLFEGKSFLANIKEVWEQDVGQVYLQEQFLSDIFETKNLKMQSIEERESIMKEMLKNRRILLVLDDVSDLDQTNVLCGNGNWLGPGSRIMITTRARHPVSKVADRIYEVRPLDILEAYRLFSWHAFKKVRFVSKMENLPVSIVNMSKGLPLVVEVLGSYLYRRAEPIWENVVSRLKQAGPNITTLELLKISYDDLDALEKDVFFDISCFFIGKDRNFVTQTLNDSGIFAETVINVLIERKLVTVDENNKLQMHDLLKEMGRGIIVKKPKSKWSYDVFLSFRGEESRRSFTSHLYTALKNAGIKVFMDNELQRGEDISSSLLKAIEDSRIAIIIFSTNYTGSKWCLDELEKIIECQRTIGQEVMPVFYNVDPSDIRKQRGTVGEAFRKLISGISVSKQKVSSWRTALTRAANFSGWDSRNYGTEVELIDCIIETIAKKVDGNTYLFIANHPVGVMSRVQDVIDMLSSLKSNSDDALIVGIWGMSGVGKTTLAKAIYNKLGCQFEGKSFLANIKEVWEHNYGQVYLQEQLLSDVLKRRRLNLHSIELGKTVIKESFHQKKTLVVLDDVNKLEQLHALCGSSEWFGPGSSIIITTQDEHLLNVLKVDAVYRIKILGKSESLELFSWHAFKQAIPPEEYTDLSDHLVYYSGGLPLALEVLGSYLFDRPKSDWKSVLRKLQKLPNDQIQKKLKLCFDGLNDDMEKDIFLDICCFFIGKDRHYVTEILNGCGLDAEIGISTLIERSLITVDNKNKLQMHNLIRDMGREVIREESPKYPEKRSRLWFHGDVVDLLRKQIGTKAIEGLALKFPNTNKIPINTEAFEKMRRLRLLQLDHVELDGDYKYLPKDLKWLCWHGFPLGDIPDDFEQRNLVAIDLKYSKLIQVWKKPQLLEKLKILNLGHSRCLTQTPDFSNLPNLERLILKDCPSLSMIHETIGSLGKLLLVNLKDCKKLNSLPRSIYKLKSLKTLILSGCSMIDKLEEDIEQMESLTTPMAIDTAISQVPSSLLRLKNIGYISLCGHEGLPCDVFPYLIWSWMSPVNNLQSLTQASGAMPSFISSDIMDNTCHGILSILSSHPNLRSLQLQCKSINHIQQEKRRVLDALSVADCTELETFPSASRTLEMGTSILRNQDNHVHISGLKTSSGSLWIYMGEHSHRDIILQVK* 1401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2238 1400 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 34 511 IPR044974 GO:0006952
Lja1g2238 1400 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 526 1354 IPR044974 GO:0006952
Lja1g2238 1400 SUPERFAMILY Toll/Interleukin receptor TIR domain 512 657 IPR035897 -
Lja1g2238 1400 SMART AAA_5 715 858 IPR003593 -
Lja1g2238 1400 SMART AAA_5 216 354 IPR003593 -
Lja1g2238 1400 PRINTS Disease resistance protein signature 1197 1213 - -
Lja1g2238 1400 PRINTS Disease resistance protein signature 888 902 - -
Lja1g2238 1400 PRINTS Disease resistance protein signature 795 809 - -
Lja1g2238 1400 PRINTS Disease resistance protein signature 718 733 - -
Lja1g2238 1400 MobiDBLite consensus disorder prediction 1 20 - -
Lja1g2238 1400 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 34 511 - -
Lja1g2238 1400 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 526 1354 - -
Lja1g2238 1400 SUPERFAMILY "Winged helix" DNA-binding domain 428 510 IPR036390 -
Lja1g2238 1400 Gene3D - 853 937 IPR042197 -
Lja1g2238 1400 Gene3D - 354 438 IPR042197 -
Lja1g2238 1400 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 448 IPR027417 -
Lja1g2238 1400 ProSiteProfiles TIR domain profile. 514 680 IPR000157 GO:0007165
Lja1g2238 1400 Gene3D - 687 848 IPR027417 -
Lja1g2238 1400 Gene3D - 188 350 IPR027417 -
Lja1g2238 1400 Gene3D Ribonuclease Inhibitor 1034 1375 IPR032675 -
Lja1g2238 1400 ProSiteProfiles TIR domain profile. 23 155 IPR000157 GO:0007165
Lja1g2238 1400 Pfam TIR domain 25 125 IPR000157 GO:0007165
Lja1g2238 1400 Pfam TIR domain 516 679 IPR000157 GO:0007165
Lja1g2238 1400 SUPERFAMILY L domain-like 1044 1353 - -
Lja1g2238 1400 Pfam NB-ARC domain 699 923 IPR002182 GO:0043531
Lja1g2238 1400 Pfam NB-ARC domain 199 421 IPR002182 GO:0043531
Lja1g2238 1400 Gene3D - 19 187 IPR035897 -
Lja1g2238 1400 Gene3D - 510 685 IPR035897 -
Lja1g2238 1400 SUPERFAMILY "Winged helix" DNA-binding domain 924 1030 IPR036390 -
Lja1g2238 1400 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 684 948 IPR027417 -
Lja1g2238 1400 SMART till_3 515 654 IPR000157 GO:0007165
Lja1g2238 1400 SMART till_3 24 158 IPR000157 GO:0007165
Lja1g2238 1400 SUPERFAMILY Toll/Interleukin receptor TIR domain 18 128 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2238 Lja-Chr1 26051551 26064511 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2238 15 506 WRKY Transcription Factor Family AT4G12020 28.008 5.91e-37 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2238 - - lja:Lj0g3v0354289.1 2748