Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lja1g2226 | ATGTCGACTATGCAGATGTCTCATGTTGATTTAGAGCAAGGGAATCATCATCATCGTCGTTCGGTTGTTGGAAGCGATGTGAGTGGTGGTGAGGGGAGCCTGTGCTTCTCTGATGTTGATATTGATGATGGGTCTTGCTACTCTCGCTTCTATTCAACCAACGGTGGTTCGTATGATGATTACAGCTTCGCTTGTGTTTCTGATCCTGAAGGTGGTGGGGGTGTTGTTGATTCTGGGAGGGCTTCTTCTGTTACTGATTGTTCTGTGGAGGTGGAAATTAGAACTGGGGTTCCTGAAATTAAGGTGCATTTGGCTAAAGTGGAGAAGGATTGTAGGATTTGTCACATGGGTTTGGAGACTGAGAGTCATGAGTCTGGTCCTCCCATTGAATTGGGTTGTTCTTGTAAGGATGATTTAGCTGCTGCTCACAAGCACTGTGCTGAGGCCTGGTTCAAGATTAAGGGAAATAGGACCTGTGAAATTTGTCATTCTGTTGCCCGAAATGTTTATGGAGCGAATGAGGAGTCAACAGAGCAAGTGAGCGACAATAACATTGCTCCTGCTACAGCTACACTCTCAGCACCTGCTCCGTCAGCAGAAACTCATAGATTTTGGCATGGCCATCGCTTCCTGAATTTTCTGCTCGCTTGTATGGTTTTTGCATTTGTCATATCATGGCTTTTTCACTTCAATGTGCCATCATCATAG | 708 | 0.4534 | MSTMQMSHVDLEQGNHHHRRSVVGSDVSGGEGSLCFSDVDIDDGSCYSRFYSTNGGSYDDYSFACVSDPEGGGGVVDSGRASSVTDCSVEVEIRTGVPEIKVHLAKVEKDCRICHMGLETESHESGPPIELGCSCKDDLAAAHKHCAEAWFKIKGNRTCEICHSVARNVYGANEESTEQVSDNNIAPATATLSAPAPSAETHRFWHGHRFLNFLLACMVFAFVISWLFHFNVPSS* | 236 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lja1g2226 | 235 | Pfam | RING-variant domain | 111 | 162 | IPR011016 | GO:0008270 | |
| Lja1g2226 | 235 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 103 | 169 | IPR011016 | GO:0008270 | |
| Lja1g2226 | 235 | SMART | ringv_2 | 110 | 163 | IPR011016 | GO:0008270 | |
| Lja1g2226 | 235 | SUPERFAMILY | RING/U-box | 108 | 166 | - | - | |
| Lja1g2226 | 235 | PANTHER | ZINC FINGER, RING-CH-TYPE | 3 | 234 | - | - | |
| Lja1g2226 | 235 | CDD | RING_CH-C4HC3_MARCH | 111 | 163 | - | - | |
| Lja1g2226 | 235 | PANTHER | OS01G0850200 PROTEIN | 3 | 234 | - | - | |
| Lja1g2226 | 235 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 100 | 172 | IPR013083 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lja1g2226 | Lja-Chr1 | 25873620 | 25877578 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lja1g2226 | 75 | 235 | C3H Transcription Factor Family | AT5G05830 | 59.877 | 1.19e-66 | 203 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lja1g2226 | - | - | gmx:100808666 | 391.734 |
Event-related genes