Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2223 ATGGCTACCCAACAACAATCTTTGCTAGACAAGCCTAGAAAATCCTTTTCCAAAACTTTCTGGTTATTCCTCTCTTTAGTTGCAATCATAAGTTCCTCAGCCCTTATTGCTTCTTATCTCAAACCCACCTCCTTCAACCTCTTCTTGTCACCTCCCCATGGCTGTGAACATGCACTTGACGCATCATCATGCTTAGCTCATGTTTCAGAAGTATCTCAAAGCCCCATCTCAGCCACAAAAGATCCCAAACTGAATATTCTCATATCCTTAATGACCAAGTCCACCTCACATATTCAAGAGGCTATGGTTAAAACAAAAGCTATCAAAAACCGGATTAACAACCCTAGAGAGGAAGCAGCTTTGTCTGACTGTGAGCAGCTAATGGACTTGTCCATAGACAGAGTGTGGGACTCAGTTATGGCTCTAACCAAAGACAACACTGATTCACACCAAGATGCTCACGCATGGCTAAGCGGTGTTCTCACGAACCATGCAACTTGCTTGGATGGACTTGAAGGTCCTTCTCGAGCACTGATGGAGGCTGAGATTGAGGACTTGATTTCAAGATCAAAAACTTCCCTGGCCCTACTTGTTTCTGTTTTGGCTCCAAAGGGTGGTAATGAACAAATCATCGATGAACCACTAGATGGGGACTTTCCTTCGTGGGTGACCAGGAAGGATCGGAGGCTGTTGGAGTCTTCGGTAGGGGACGTAAATGCCAATGTTGTGGTGGCTAAGGATGGGAGTGGCAGGTTCAAGACTGTGGCTGAGGCTGTTGCATCGGCACCTGACAGCGGTAAGACAAGGTATGTTATCTATGTGAAGAAAGGAACCTATAAGGAGAACATTGAAATTGGTAAGAAGAAGACGAATGTGATGCTCACTGGAGATGGTATGGATGCAACTATTATCACCGGGAACTTGAATGTCATCGATGGAAGTACCACATTCAAAAGTGCCACTGTTGCTGCTGTGGGCGACGGGTTTATAGCCCAAGACATTTGGTTCCAAAACACAGCAGGACCAGAAAAGCACCAGGCAGTGGCTCTTCGTGTTGGAGCAGACCAATCCATCATAAACCGTTGTCGAATTGACGCTTACCAAGACACTCTCTACGCCCATACGAATAGACAGTTCTACCGAGACTCCTTCATCACAGGTACCATTGACTTCATATTCGGAAACGCGGCTGTTGTGTTCCAAAAGTGCAATATAGTGGCCCGAAAGCCCATGAGTAACCAGAAAAACATGCTCACGGCCCAAGGGCGTGAAGACCCAAACCAAAACACAGGAACTTCAATTCAGCAATGTAACCTGACACCAAGCCAAGACCTTAAGCCCGTTGCGGGCTCCATTAAAACTTATTTGGGTCGCCCGTGGAAGAAGTACTCAAGAACTATTGTGCTACAGTCCTCAATTGATAGCCATATTGATCCAACAGGATGGGCTGAGTGGGATGCTCAGAGTAAGGACTTTCTGCAGACATTGTATTATGGAGAGTACTTGAACAGTGGAGCAGGTGCTGGTACTGGTAAAAGAGTGAACTGGCCTGGTTTCCATGTCATTAAAACAGCAGCAGAGGCTAGCAAGTTCACTGTAGCACAACTCATCCAAGGTAATGTTTGGTTAAAAGGCAAGGGGGTTAACTTCATTGAGGGCCTTTAG 1665 0.4601 MATQQQSLLDKPRKSFSKTFWLFLSLVAIISSSALIASYLKPTSFNLFLSPPHGCEHALDASSCLAHVSEVSQSPISATKDPKLNILISLMTKSTSHIQEAMVKTKAIKNRINNPREEAALSDCEQLMDLSIDRVWDSVMALTKDNTDSHQDAHAWLSGVLTNHATCLDGLEGPSRALMEAEIEDLISRSKTSLALLVSVLAPKGGNEQIIDEPLDGDFPSWVTRKDRRLLESSVGDVNANVVVAKDGSGRFKTVAEAVASAPDSGKTRYVIYVKKGTYKENIEIGKKKTNVMLTGDGMDATIITGNLNVIDGSTTFKSATVAAVGDGFIAQDIWFQNTAGPEKHQAVALRVGADQSIINRCRIDAYQDTLYAHTNRQFYRDSFITGTIDFIFGNAAVVFQKCNIVARKPMSNQKNMLTAQGREDPNQNTGTSIQQCNLTPSQDLKPVAGSIKTYLGRPWKKYSRTIVLQSSIDSHIDPTGWAEWDAQSKDFLQTLYYGEYLNSGAGAGTGKRVNWPGFHVIKTAAEASKFTVAQLIQGNVWLKGKGVNFIEGL* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2223 554 Gene3D - 235 554 IPR012334 -
Lja1g2223 554 ProSitePatterns Pectinesterase signature 2. 385 394 IPR033131 -
Lja1g2223 554 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 55 196 IPR035513 -
Lja1g2223 554 Pfam Pectinesterase 241 540 IPR000070 GO:0030599|GO:0042545
Lja1g2223 554 SMART PMEI_2 47 196 IPR006501 GO:0004857
Lja1g2223 554 Gene3D Invertase/pectin methylesterase inhibitor family protein 53 201 IPR035513 -
Lja1g2223 554 ProSitePatterns Pectinesterase signature 1. 266 285 IPR018040 -
Lja1g2223 554 PANTHER PECTINESTERASE 13 553 - -
Lja1g2223 554 SUPERFAMILY Pectin lyase-like 239 553 IPR011050 -
Lja1g2223 554 Pfam Plant invertase/pectin methylesterase inhibitor 55 188 IPR006501 GO:0004857
Lja1g2223 554 CDD PMEI-like_4 57 200 - -
Lja1g2223 554 TIGRFAM PME_inhib: pectinesterase inhibitor domain 55 194 IPR006501 GO:0004857
Lja1g2223 554 PANTHER PECTINESTERASE 13 553 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2223 Lja-Chr1 25830720 25834099 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2223 1 554 Carbohydrate Esterase AT1G11580 56.460 0.0 622
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2223 K01051 - gmx:100815836 860.136