Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2221 ATGGCTACCCCACAACAATCTTTGCTAGACAAGCCTAGAAAATCCTTTTCCAAAACTTTCTGGTTATTCCTCTCTTTAGCTGCTATCATAAGTTCCTCAGCCCTTATTGCTTCTTATCTCAAACCCACCTCCTTCAACCTCTTCTTGTCACCTCCCAATGGCTGTGAACATGCACTTGACGCATCATCATGCTTAGCTCATGTTTCAGAAGTATCTCAAAGCCCCATCTCAGCCACCACAAAAGACCCCAAACTGAATATTCTCATATCCTTAATGACCAAGTCCACCTCACACATTCAGGAAGCTATGGTCAAAACCAAAGCTATCAAAAACCGCATTAACAACCCTAAAGAGGAGGCAGCTTTGTCTGACTGTGAGCAGCTAATGGACTTGTCCATAGACAGAGTGTGGGACTCAGTTATGGCTCTAACCAAAGACACCACTGATTCACACCAAGATGCACACGCATGGCTAAGCGGTGTGCTCACGAACCATGCAACTTGCTTGGATGGACTAGAAGGTCCATCACGGTCACTAATGGAGGTTGAGATTGAGGACTTGATTTCAAGATCAAGAACTTCTCTAGCCCTACTTGTTTCTGTTTTGGCTCCAAATGGTGGTCATGAACAATTCATCGATGAGCCACTAAATGGGGACTTTCCATCATGGGTGACCAGGAAGGATCGGAGGCTGTTGGAGTCTTCGGTAGGGGACGTAAATGCCAATGTTGTGGTGGCTAAGGATGGGAGTGGCAGGTTCAAGACTGTGGCTGAGGCTGTTGCATCGGCACCTGACAGCGGTAAGACAAGGTATGTTATCTATGTGAAGAAAGGAACCTATAAGGAGAACATTGAAATTGGTAAGAAGAAGACGAATGTGATGCTCACTGGGGATGGTATGGGTGCAACTATTATCACCGGGAACTTGAATGTCATCGATGGAAGTACCACGTTCAAAAGTGCCACTGTTGCTGCTGTGGGCGACGGGTTTATAGCCCAAGACATTTGGTTCCAAAACACAGCAGGACCACAAAAGGAACAGGCAGTGGCTCTTCGTGTTGGAGCAGACCAATCCATCATAAACCGTTGCCGAATTGACGCTTACCAAGACTCTCTCTACACTCATACCAATAGACAGTTTTACCGAGACTCCTTCATCACAGGTACCGTTGACTTCATCTTCGGAAACGCAGCTGTTGTGTTCCAAAAGTGTAATATAGTGGCCAGGAAGCCCATGAGTAACCAAAAAAACATGCTCACGGCCCAAGGGCGTGAAGACCCAAACCAAAACACAGGAACTTCAATTCAGCAATGTAACCTGACACCAAGCCAGGATCTTAAGCCCGTTGCGGGATCCATCAAAACTTACTTGGGTCGCCCATGGAAGAAGTACTCAAGAACTGTTGTGATGCAGTCCTCCATTGATAGCCATATTGATCCAACAGGATGGGCTGAGTGGAATGCTGAGAGTAAGCACTTTCTGCAAACGTTGTATTATGGAGAATACTTGAACAGTGGAGCAGGTGCTGGTACTGGTAAAAGAGTGAATTGGCCTGGTTACCATGTCATCAAAACAGCAGCTGAGGCTAGCAAGTTCACTGTAGCACAACTCATCCAAGGTAATGTTTGGTTAAAGGGCAAGGGGGTTAACTTCATTGAGGGCCTTTAG 1668 0.4622 MATPQQSLLDKPRKSFSKTFWLFLSLAAIISSSALIASYLKPTSFNLFLSPPNGCEHALDASSCLAHVSEVSQSPISATTKDPKLNILISLMTKSTSHIQEAMVKTKAIKNRINNPKEEAALSDCEQLMDLSIDRVWDSVMALTKDTTDSHQDAHAWLSGVLTNHATCLDGLEGPSRSLMEVEIEDLISRSRTSLALLVSVLAPNGGHEQFIDEPLNGDFPSWVTRKDRRLLESSVGDVNANVVVAKDGSGRFKTVAEAVASAPDSGKTRYVIYVKKGTYKENIEIGKKKTNVMLTGDGMGATIITGNLNVIDGSTTFKSATVAAVGDGFIAQDIWFQNTAGPQKEQAVALRVGADQSIINRCRIDAYQDSLYTHTNRQFYRDSFITGTVDFIFGNAAVVFQKCNIVARKPMSNQKNMLTAQGREDPNQNTGTSIQQCNLTPSQDLKPVAGSIKTYLGRPWKKYSRTVVMQSSIDSHIDPTGWAEWNAESKHFLQTLYYGEYLNSGAGAGTGKRVNWPGYHVIKTAAEASKFTVAQLIQGNVWLKGKGVNFIEGL* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2221 555 ProSitePatterns Pectinesterase signature 1. 267 286 IPR018040 -
Lja1g2221 555 CDD PMEI-like_4 57 201 - -
Lja1g2221 555 Pfam Plant invertase/pectin methylesterase inhibitor 55 186 IPR006501 GO:0004857
Lja1g2221 555 PANTHER PECTINESTERASE 22 553 - -
Lja1g2221 555 Pfam Pectinesterase 242 541 IPR000070 GO:0030599|GO:0042545
Lja1g2221 555 SMART PMEI_2 47 197 IPR006501 GO:0004857
Lja1g2221 555 SUPERFAMILY Pectin lyase-like 240 554 IPR011050 -
Lja1g2221 555 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 55 197 IPR035513 -
Lja1g2221 555 Gene3D Invertase/pectin methylesterase inhibitor family protein 53 202 IPR035513 -
Lja1g2221 555 PANTHER PECTINESTERASE 22 553 - -
Lja1g2221 555 ProSitePatterns Pectinesterase signature 2. 386 395 IPR033131 -
Lja1g2221 555 TIGRFAM PME_inhib: pectinesterase inhibitor domain 55 188 IPR006501 GO:0004857
Lja1g2221 555 Gene3D - 236 555 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2221 Lja-Chr1 25808145 25810934 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2221 1 555 Carbohydrate Esterase AT1G11580 55.830 0.0 609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2221 K01051 - gmx:100815836 854.358