Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2212 ATGCCCAAAATGATTACTGATCAAGAACTTGACTTCAATCCCAATTATCTCAAACTATATTACGGAAAGTTGTTTCCTTTCACTGATATATTTAGATGGATGTCTTATGGCAATGATGGGAAGCACCCTGGTTGTGATTCATCCTACTTTGGCCGAAGAGAGTTTTCATTCACTCTGGAAAATGATATTTATCTGCGGTTCCAATCTTTCAACAATGCCCTTGAGCTCGAAAACTCCATCAAAGAAAAGTCCCCATTTAAGATAGACATTGGACCTGTCTACACTGTCGATCCTGCAAAAAGGCATGCCTATGCACAGGGTGATAATAAAGTTTTCGCACCTGTTGAGAGAGAGTTGATTTTTGATATAGATATGTCAGATTATGATGATGTTAGATACTGCTGCTCTGGTGCGGATGTTTGCTTGAACTGCTGGCCGTTGATGACTATAGCTATCAAAGTGATTGATACGGCCTTGAGAGATGACTTTGGTTTCAAGCACATTCTCTGGGTCTATAGTGGACGAAGAGGTGTTCATTGCTGGGTTTGTGATCAGAAGGCAAGAAGGTTGACTAATGAGCAAAGAGCTGCTATTGCTGACTATTTTCGTGTCTACAAGGGCAATGAAAATACTCATAAGAAGATTTCTTTGACTGGCGCTGCTCTTCATCCTTTCTTGGCAACATCATACACTAGCGTTCTCAAACATTTCTTTGAGAAAAATCTACTGACAAGTCAAAATTTACTTGCTACTGAGGAGAGATATGAGAAGATCCTTGACATGATTCCAGATGAATCTATTGCTTCTAAACTTAGGGGAAAATGGCAAGACAGTAGACGGTCCTCTAGTACAAAAGAAGACATTAATGTTGTGCGATGGGAACAGTGCAAACAATTGCTGCAATCTGGAAAAAATAAGCCACAAGGACTACGAAGGTGCGTTGAAGAGATTGTGTTCTGCTATACTTACCCCAGGCTAGATATGGAGGTTTCAAAACATATGAATCATTTGCTTAAAGCACCATTCTGTGTACATCCAAAAACAGGCCGTGTCTGTGTCCCTATCGATCCAAATCGGTGTGAGGAGTTTGATCCTACTACAGTTCCCACTCTTTCGCAGCTGCTAGAAGAGCTTAATAATGAAGGCTCGAAAGCTGATGTTGATGGTGGGAAGGGAACTTCGCTTGGAAATGACATAACGTTCTTCAGATCATCATTCTTACAGCCTTTACTTAAAGCTTGCAAGGAGGAGATAGAAAGTTCCTATAACTTAAAATTGCAGCAGTCAAAGAATTCCCTCGGTTGGTAG 1308 0.4067 MPKMITDQELDFNPNYLKLYYGKLFPFTDIFRWMSYGNDGKHPGCDSSYFGRREFSFTLENDIYLRFQSFNNALELENSIKEKSPFKIDIGPVYTVDPAKRHAYAQGDNKVFAPVERELIFDIDMSDYDDVRYCCSGADVCLNCWPLMTIAIKVIDTALRDDFGFKHILWVYSGRRGVHCWVCDQKARRLTNEQRAAIADYFRVYKGNENTHKKISLTGAALHPFLATSYTSVLKHFFEKNLLTSQNLLATEERYEKILDMIPDESIASKLRGKWQDSRRSSSTKEDINVVRWEQCKQLLQSGKNKPQGLRRCVEEIVFCYTYPRLDMEVSKHMNHLLKAPFCVHPKTGRVCVPIDPNRCEEFDPTTVPTLSQLLEELNNEGSKADVDGGKGTSLGNDITFFRSSFLQPLLKACKEEIESSYNLKLQQSKNSLGW* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2212 435 PANTHER DNA PRIMASE 23 435 - -
Lja1g2212 435 SUPERFAMILY Prim-pol domain 13 380 - -
Lja1g2212 435 PANTHER DNA PRIMASE SMALL SUBUNIT 23 435 IPR014052 GO:0003896|GO:0006269
Lja1g2212 435 TIGRFAM primase_sml: putative DNA primase, eukaryotic-type, small subunit 18 376 IPR014052 GO:0003896|GO:0006269
Lja1g2212 435 CDD AE_Prim_S 26 365 IPR014052 GO:0003896|GO:0006269
Lja1g2212 435 Pfam DNA primase small subunit 121 356 IPR002755 GO:0003896|GO:0006269
Lja1g2212 435 Gene3D DNA primase, PRIM domain 3 416 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2212 9 435 Core DNA Replication Machinery Family AT5G41880 68.298 0.0 633
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2212 K02684 - gmx:100780574 804.283